Proteomics: Sequence, Structure, Function

Journal Club: Statistical and Evolutionary Genomics/Proteomics

March 29 - May 31, 2004

Mondays 4:00 - 5:00
IPAM Building, Room 1180

• 3/29:
  • Siepel and Haussler. Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. SMBE. 2004.
    
    alternative suggested by Carlos Bustamante:
  • Chen, et. al. Codon usage between genomes is constrained by genome-wide mutational processes. PNAS. 2004.
• 4/26:
  • Kellis M, Birren BW, Lander ES. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature. 2004 Apr 8; 428(6983):617-24. 
  • Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, Mohr C, Pohlmann R, Luedi P, Choi S, Wing RA, Flavier A, Gaffney TD, Philippsen P. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science. 2004 Apr 9; 304(5668):304-7.