Functional Genomics Tutorials

Part of the Long Program Functional Genomics
September 19 - 27, 2000

Schedule


Tuesday, September 19, 2000

10:00 - 11:00
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Molecular biology databases: The blueprint of life
Presentation (PowerPoint File)

11:15 - 12:15
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Molecular biology databases
Presentation (PowerPoint File)

1:30 - 2:30
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Sequence analysis of nucleic acids and proteins I: Similarity searches
Presentation (PowerPoint File)


Wednesday, September 20, 2000

10:00 - 11:00
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Sequence Analysis of nucleic acids and proteins II: Prediction of structure and function
Presentation (PowerPoint File)

11:15 - 12:15
Terry Speed (University of California at Berkeley)

Network analysis of molecular interactions
Presentation (PowerPoint File)

1:30 - 2:30
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Some molecular biology
Presentation (PowerPoint File)


Thursday, September 21, 2000

10:00 - 11:00
Timothy Triche (USC / CHLA)

Gene Expression Profiling as Indices of Biologic and Clinical Behavior in Cancer: Comparison of Clustering Methods and Correlating Biological Indicators: Technology & Gene Target ID
Presentation (PowerPoint File)

11:15 - 12:15
1:30 - 2:30

Friday, September 22, 2000

9:00 - 10:00
11:15 - 12:15
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Image analysis of cDNA microarrays
Presentation (PowerPoint File)

1:30 - 2:30
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Basic statistical analysis of cDNA microarray data I
PDF Presentation


Saturday, September 23, 2000

10:00 - 11:30
Gary Churchill (Jackson Laboratory)

Experimental Design and Data Analysis for Gene Expression Microarrays: Experimental Design
PDF Presentation

1:30 - 2:30
Gary Churchill (Jackson Laboratory)

Experimental Design and Data Analysis for Gene Expression Microarrays: ANOVA


Monday, September 25, 2000

10:00 - 11:00
Christopher Lee (UCLA)

Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Biology of sequence variation - polymorphism among individuals, ribotypes among cells
Presentation (PowerPoint File)

11:15 - 12:15
Christopher Lee (UCLA)

Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Biology of sequence variation - polymorphism among individuals, ribotypes among cells
Presentation (PowerPoint File)

1:30 - 2:30
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Basic statistical analysis of cDNA microarray data II
Presentation (PowerPoint File)


Tuesday, September 26, 2000

10:00 - 11:00
Christopher Lee (UCLA)

Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Role of probability in prediction and in computing confidence levels, graphs as a technique for calculating evidence

11:15 - 12:15
Christopher Lee (UCLA)

Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Role of probability in prediction and in computing confidence levels, graphs as a technique for calculating evidence

1:30 - 2:30
Roger Brent (Molecular Sciences Institute)

Why Biologists Need Mathematicians I: Themes from Biological Systems
Presentation (PowerPoint File)


Wednesday, September 27, 2000

10:00 - 11:00
Roger Brent (Molecular Sciences Institute)

Why Biologists Need Mathematicians II: Types of data - how biological information is gathered.

11:15 - 12:15
Roger Brent (Molecular Sciences Institute)

Why Biologists Need Mathematicians III: Possible Issues for Mathematicians

1:30 - 2:30
Terry Speed (University of California at Berkeley)

Overview of Computational Biology for Mathematical Scientists: Classification and discrimination of cell lines using cDNA microarray data
PDF Presentation