Workshop I: High Throughput Technologies and Methods of Analysis

March 22 - 26, 2004

Schedule


Monday, March 22, 2004

9:00 - 10:00
10:30 - 11:30
1:30 - 2:30
Shankar Subramaniam (University of California at San Diego)

Contextual Analysis of Biochemical Networks in Mammalian Cells

3:00 - 4:00

Tuesday, March 23, 2004

9:00 - 10:00
Tim Veenstra (National Cancer Institute)

Analysis of the Human Serum Proteome
Presentation (PowerPoint File)

10:30 - 11:30
Tim Ting Chen (University of Southern California)

Reliability of protein interaction data sets and prediction of protein domain interactions

1:30 - 2:30
Austin Yang (University of Southern California)

 

3:00 - 4:00
Christoph Borchers (University of North Carolina)

Novel Comprehensive Proteomic Approaches to Address Biological Problems

4:00 - 5:00
Nouri Neamati (University of Southern California)

Proteomics and the new frontiers

6:30 - 7:30

Wednesday, March 24, 2004

9:00 - 10:00
10:30 - 11:30
1:30 - 2:30
3:00 - 4:00
Fernando Pineda (Johns Hopkins University)

Algorithms and Databases for rapid microorganism identification, Statistical model of proteolytic digestion for improved protein identification

4:00 - 5:00
Michael Snyder (Yale University)

Global analysis of Genomes and Proteomes
Presentation (PowerPoint File)


Thursday, March 25, 2004

9:00 - 10:00
Pavel Pevzner (University of California at San Diego)

 

10:30 - 11:30
Weixiong Zhang (Washington University)

Discovering Temporal Gene Regulatory Networks

1:30 - 2:30
Vineet Bafna (University of California at San Diego)

De novo interpretation of tandem mass spectra
Presentation (PowerPoint File)

3:00 - 4:00
4:00 - 5:00
Alexander Hartemink (Duke University)

Classification in high-dimensional spaces: joint classification and feature selection
PDF Presentation


Friday, March 26, 2004

9:00 - 10:00
Edward Marcotte (University of Texas, Austin)

The structure and dynamics of genome-wide protein networks

10:30 - 11:30
Fengzhu Sun (University of Southern California)

An Integrated Approach for Protein Function Prediction

1:30 - 2:30
William Noble (University of Washington)

A kernel framework for genomic data fusion
Presentation (PowerPoint File)

3:00 - 4:00
4:00 - 5:00
Bin Ma (University of West Ontario)

PEAKS: Accurate de novo sequencing using MS/MS
Presentation (PowerPoint File)