Workshop I: High Throughput Technologies and Methods of Analysis

Part of the Long Program Proteomics: Sequence, Structure, Function
March 22 - 26, 2004

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, March 22, 2004

Morning Session
8:00 - 8:45 Check-In/Breakfast (Hosted by IPAM)
8:45 - 9:00 Welcome and Opening Remarks
9:00 - 10:00
10:00 - 10:30 Break
10:30 - 11:30
11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
Shankar Subramaniam (University of California at San Diego)

Contextual Analysis of Biochemical Networks in Mammalian Cells

2:30 - 3:00 Break
3:00 - 4:00
4:00 - 5:00

To Be Announced

Tuesday, March 23, 2004

Morning Session
8:00 - 9:00 Check-In/Breakfast (Hosted by IPAM)
9:00 - 10:00
Tim Veenstra (National Cancer Institute)

Analysis of the Human Serum Proteome
Presentation (PowerPoint File)
10:00 - 10:30 Break
10:30 - 11:30
Tim Ting Chen (University of Southern California)

Reliability of protein interaction data sets and prediction of protein domain interactions

11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
Austin Yang (University of Southern California)

 

2:30 - 3:00 Break
3:00 - 4:00
Christoph Borchers (University of North Carolina)

Novel Comprehensive Proteomic Approaches to Address Biological Problems

4:00 - 5:00
Nouri Neamati (University of Southern California)

Proteomics and the new frontiers

5:00 - 6:30 Wine/Cheese Reception (Hosted by IPAM)
6:30 - 7:30

Wednesday, March 24, 2004

Morning Session
8:00 - 9:00 Check-In/Breakfast (Hosted by IPAM)
9:00 - 10:00
10:00 - 10:30 Break
10:30 - 11:30
11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
2:30 - 3:00 Break
3:00 - 4:00
Fernando Pineda (Johns Hopkins University)

Algorithms and Databases for rapid microorganism identification, Statistical model of proteolytic digestion for improved protein identification

4:00 - 5:00
Michael Snyder (Yale University)

Global analysis of Genomes and Proteomes
Presentation (PowerPoint File)

Thursday, March 25, 2004

Morning Session
8:00 - 9:00 Check-In/Breakfast (Hosted by IPAM)
9:00 - 10:00
Pavel Pevzner (University of California at San Diego)

 

10:00 - 10:30 Break
10:30 - 11:30
Weixiong Zhang (Washington University)

Discovering Temporal Gene Regulatory Networks

11:30 - 1:30 Lunch (Hosted by IPAM)

Afternoon Session
1:30 - 2:30
Vineet Bafna (University of California at San Diego)

De novo interpretation of tandem mass spectra
Presentation (PowerPoint File)
2:30 - 3:00 Break
3:00 - 4:00
4:00 - 5:00
Alexander Hartemink (Duke University)

Classification in high-dimensional spaces: joint classification and feature selection
PDF Presentation

Friday, March 26, 2004

Morning Session
8:00 - 9:00 Check-In/Breakfast (Hosted by IPAM)
9:00 - 10:00
Edward Marcotte (University of Texas, Austin)

The structure and dynamics of genome-wide protein networks

10:00 - 10:30 Break
10:30 - 11:30
Fengzhu Sun (University of Southern California)

An Integrated Approach for Protein Function Prediction

11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
William Noble (University of Washington)

A kernel framework for genomic data fusion
Presentation (PowerPoint File)
2:30 - 3:00 Break
3:00 - 4:00
4:00 - 5:00
Bin Ma (University of West Ontario)

PEAKS: Accurate de novo sequencing using MS/MS
Presentation (PowerPoint File)