Monday, May 22, 2006
|
Morning Session
|
|
8:00 - 8:45
|
Check-In/Breakfast (Hosted by IPAM)
|
|
8:45 - 9:00
|
Welcome and Opening Remarks
|
|
9:00 - 10:00
|
David Stocum (Indiana University - Purdue University)
"Self-Organization of the Amphibian Limb Regeneration Blastema: Cellular and Molecular Mechanisms. "
Audio (MP3 File, Podcast Ready)
|
|
10:00 - 10:30
|
Break
|
|
10:30 - 11:30
|
Armin Kaiser (Stanford University)
"Bacterial Cooperativity"
Audio (MP3 File, Podcast Ready)
|
|
11:30 - 2:00
|
Lunch (on your own)
|
Afternoon Session
|
|
2:00 - 3:00
|
Hans Meinhardt (Max-Planck-Institut für Entwicklungsbiologie (Developmental Biology))
"Models of biological pattern formation: from elementary steps to the patterning of the main body axes"
|
|
3:00 - 3:30
|
Break
|
|
3:30 - 4:30
|
Jim McGrath (University of Rochester)
"From molecules to monolayers: solving sheet migration with models at every length scale"
|
|
4:30 - 5:30
|
Christoph Adami (Keck Graduate Institute)
"Digital Genetics: Unraveling the Genetic Basis of Evolution"
|
|
5:30 - 7:00
|
Wine/Cheese Reception (Hosted by IPAM)
|
Tuesday, May 23, 2006
|
Morning Session
|
|
8:00 - 9:00
|
Continental Breakfast
|
|
9:00 - 10:00
|
Christopher Rao (University of Illinois at Urbana-Champaign)
"Modeling the developmental program for the flagellum and type III secretion apparatus in Salmonella typhimurium"
|
|
10:00 - 10:30
|
Break
|
|
10:30 - 11:30
|
Michael Samoilov (Howard Hughes Medical Institute)
"Quantitative Analysis of Genetic Regulation at Different Scales"
Audio (MP3 File, Podcast Ready)
|
|
11:30 - 2:00
|
Lunch (on your own)
|
Afternoon Session
|
|
2:00 - 3:00
|
Joel Bader (Johns Hopkins University)
"Ab initio predictions of transcription factor binding"
Audio (MP3 File, Podcast Ready)
|
|
3:00 - 3:30
|
Break
|
|
3:30 - 4:30
|
Denise Wolf (Lawrence Berkeley Laboratory)
"Diversity in times of adversity: probabilistic strategies in microbial survival games"
Audio (MP3 File, Podcast Ready)
|
|
4:30 - 5:30
|
Arthur Lander (University of California, Irvine)
"Exploring the performance objectives of morphogen gradient systems"
Audio (MP3 File, Podcast Ready)
|
Wednesday, May 24, 2006
|
Morning Session
|
|
8:00 - 9:00
|
Continental Breakfast
|
|
9:00 - 10:00
|
Reka Albert (Pennsylvania State University)
"Qualitative modeling of gene regulatory networks"
Audio (MP3 File, Podcast Ready)
|
|
10:00 - 10:30
|
Break
|
|
10:30 - 11:30
|
Shayn Peirce-Cottler (University of Virginia)
"Using Agent-Based Models to Study Tissue Patterning Processes: Linking Molecular Pathways to Multi-Cell Behaviors in Tissues"
Audio (MP3 File, Podcast Ready)
|
|
11:30 - 2:00
|
Lunch (on your own)
|
Afternoon Session
|
|
2:00 - 3:00
|
Claire Tomlin (Stanford University)
"Using the adjoint method for parameter identification of large scale protein regulatory networks. Application to planar cell polarity in Drosophila."
Audio (MP3 File, Podcast Ready)
|
|
3:00 - 3:30
|
Break
|
|
3:30 - 4:30
|
Hans Meinhardt (Max-Planck-Institut für Entwicklungsbiologie (Developmental Biology))
"Self-poisoning of just established signalling centers - a common mechanism in biology to generate highly dynamic patterns"
Audio (MP3 File, Podcast Ready)
|
|
4:30 - 5:30
|
Armin Kaiser (Stanford University)
"Evolution of multicellular complexity"
Audio (MP3 File, Podcast Ready)
|
|
5:30 - 7:00
|
Dinner (Hosted by IPAM)
|
Thursday, May 25, 2006
|
Morning Session
|
|
8:00 - 9:00
|
Continental Breakfast
|
|
9:00 - 10:00
|
Drew Endy (Massachusetts Institute of Technology)
"Foundations for Engineering Biology"
|
|
10:00 - 10:30
|
Break
|
|
10:30 - 11:30
|
Raymond Goldstein (University of Arizona)
"Physical Aspects of Evolutionary Transitions to Multicellularity"
Audio (MP3 File, Podcast Ready)
|
|
11:30 - 1:15
|
Lunch (on your own)
|
Afternoon Session
|
|
1:15 - 2:00
|
William Smith (UC Santa Barbara)
|
|
2:00 - 3:00
|
Ivet Bahar (University of Pittsburgh)
"Network Models for Understanding Biomolecular Systems Dynamics and Allostery"
|
|
3:00 - 3:30
|
Break
|
|
3:30 - 4:30
|
Richard Dickinson (University of Florida)
"Models for Intracellular Particle Transport by Actin-Based Motility"
Audio (MP3 File, Podcast Ready)
|
|
4:30 - 5:30
|
Sean Sun (Johns Hopkins University)
"Computational modeling of the cellular leading edge"
Audio (MP3 File, Podcast Ready)
|
|
5:30 - 6:30
|
James Glazier (Indiana University)
"Demo of Cell Oriented Modeling Using Coppucell 3D"
|
Friday, May 26, 2006
|
Morning Session
|
|
8:00 - 9:00
|
Continental Breakfast
|
|
9:00 - 10:00
|
Kevin Karplus (UC Santa Cruz)
"Protein prediction: not another optimization problem "
|
|
10:00 - 10:30
|
Break
|
|
10:30 - 11:30
|
David Stocum (Indiana University - Purdue University)
"Self Organization of the Limb Regeneration Blastema: Cellular and Molecular Mechanisms"
Audio (MP3 File, Podcast Ready)
|
|
11:30 - 2:00
|
Lunch (on your own)
|
Afternoon Session
|
|
2:00 - 3:00
|
Gaudenz Danuser (The Scripps Research Institute)
"Microtubule regulation by kinetochores: Experimental and numerical challenges"
|
|
3:00 - 3:30
|
Break
|
|
3:30 - 4:30
|
Steven Gross (University of California, Irvine)
|
|
4:30 - 5:30
|
Daniel Kamei (UCLA)
"Engineering Therapeutic Proteins with Cell-Level Modeling"
|