Tuesday, June 01, 2004
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Morning Session
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9:00 - 9:15
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Welcome and Opening Remarks
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9:15 - 10:00
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Eric Schadt (Rosetta Inpharmatics, Inc.)
"Statistical Methods for Reconstructing Genetic Networks from Gene Expression Data in Segregating Mouse Populations"
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10:05 - 10:50
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Andrew Su (Genomics Institute of Novartis Research Foundation)
"Mining high-throughput biological data: Inferring function from gene expression, and correlating mouse phenotype to genotype"
Presentation (PDF File)
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10:50 - 11:20
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Break
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11:20 - 11:50
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Christopher Hart (California Institute of Technology)
"Towards Computational Mapping of Gene Network Modules: Integration of Multiple Large Scale Data Sources"
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12:00 - 2:00
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Lunch (on your own)
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Afternoon Session
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2:00 - 2:45
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Bin Yu (University of California at Berkeley)
"MDL and Its Application to Simultaneous Gene Clustering and Selection "
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2:50 - 3:35
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Chien-Cheng (George) Tseng (University of Pittsburgh)
"Tight Clustering: a Resampling-based Approach for Identifying Stable and Tight Patterns in Clusters in Expression Profiles"
Presentation (PowerPoint File)
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3:35 - 4:00
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Break
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4:00 - 4:30
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Jing Wu (University of California at Santa Cruz)
"Coding exon detection using comparative sequences"
Presentation (PDF File)
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4:35 - 5:05
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Debashis Ghosh (University of Michigan)
"Semparametric Regression for Microarray Gene Expressions: Support Vector Machines and Mixed Models"
Presentation (PDF File)
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5:05 - 7:00
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Wine Reception (Hosted by IPAM)
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Wednesday, June 02, 2004
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Morning Session
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9:00 - 9:15
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Introduction
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9:15 - 10:00
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Wen-Hsiung Li (University of Chicago)
"Expression and functional Divergences of Duplicate Genes at the Genomic Level"
Presentation (PowerPoint File)
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10:05 - 10:50
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Trey Ideker (University of California at San Diego)
"PathBLAST: Finding conserved pathways via protein network alignment"
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10:50 - 11:20
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Break
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11:20 - 11:50
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Harry Zuzan (Duke University)
"Generalized SVD Analysis for Improved Estimation of Expression Indices in the Li-Wong Framework"
Presentation (PDF File)
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12:00 - 2:00
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Lunch (on your own)
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Afternoon Session
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2:00 - 2:45
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Daniel Geschwind (UCLA)
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2:50 - 3:35
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Sorin Istrail (Celera Genomics)
"On the General and Logical Theory of Genomic Regulatory Systems"
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3:35 - 4:00
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Break
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4:00 - 4:30
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Xianghong Zhou (University of Southern California)
"Integrating Cross-Platform Microarray Data for Functional Annotation and Regulatory Network Reconstruction"
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4:35 - 5:05
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Chiara Sabatti (UCLA)
"Transcription Regulation Networks "
Presentation (PDF File)
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Thursday, June 03, 2004
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Morning Session
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9:00 - 9:15
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Introduction
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9:15 - 10:00
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Jae Lee (University of Virginia)
"Statistical Methods for Analyzing Microarray Data with Limited Replication "
Presentation (PowerPoint File)
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10:05 - 10:35
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Erin Conlon (University of Massachusetts)
"Integrating DNA Motif Discovery and Genome-Wide Expression Analysis"
Presentation (PDF File)
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10:35 - 11:00
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Break
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11:00 - 11:30
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Dirk Holste (Humboldt University, Berlin)
"Predictive identification of alternative splicing in human genes"
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11:35 - 12:05
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Haiyan Huang (Harvard University)
"Characterizing short DNA-binding motifs"
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12:05 - 2:00
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Lunch (on your own)
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Afternoon Session
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2:00 - 2:45
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Earl Hubbell (Affymetrix)
"PLIER: Getting a Grip on Low Level Expression Analysis"
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2:50 - 3:35
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Li Zhang (MD Anderson)
"Technical factors that affect measurements of gene expression using short oligonucleotide microarrays"
Presentation (PowerPoint File)
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3:35 - 4:00
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Break
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4:00 - 4:30
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Steve Horvath (UCLA)
"Using of random forest predictors for mining array data"
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4:35 - 5:05
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Tracy Bergemann (University of Washington)
"Image Analysis and Signal Extraction from cDNA Microarrays"
Presentation (PowerPoint File)
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5:05 - 7:00
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Dinner (Hosted by IPAM)
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Friday, June 04, 2004
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Morning Session
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9:00 - 9:15
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Introduction
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9:15 - 10:00
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Ker-chau Li (UCLA)
"Liquid association for gene expression data analysis"
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10:05 - 10:35
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Henry Horng-Shing Lu (National Chiao Tung University)
"Clustered ANOVA with Mixtures (CANOVAM) for Microarray Data"
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10:35 - 11:00
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Break
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11:00 - 11:30
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J. Gargus (University of California at Irvine)
"Functional genomic approach to ion channel diseases"
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11:35 - 12:00
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Discussion/Closing Remarks
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