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Graduate Summer School: Mathematics in Brain Imaging

July 12 - 23, 2004

UCLA Faculty Center
480 Circle Dr E
California Room

Printable Version

Week 1 - Computational Anatomy


Monday, July 12, 2004

Day 1 - Introduction to Computational Anatomy

Morning Session

9:00 - 9:15 Welcome and Opening Remarks
9:15 - 10:15

Michael Miller (Johns Hopkins University)

"The Emerging Field of Computational Anatomy"

10:15 - 10:45 Break
10:45 - 11:45

Paul Thompson (UCLA)

"Medical and Neuroscience Applications of Computational Anatomy"

11:45 - 2:00 Lunch (on your own)

Afternoon Session

2:00 - 3:00

Jerry Prince (Johns Hopkins University)

"Surface Segmentation and Topology"
Presentation (PowerPoint File)
Additional Presentation Files (Zip Archive)

3:00 - 3:15 Break
3:15 - 4:15

Bruce Fischl (Massachusetts General Hospital)

"Segmenting Anatomical Surfaces and Volumes with Markov Models"
Presentation (PDF File)

4:30 - 6:30 Wine Reception (Hosted by IPAM)

Tuesday, July 13, 2004

Day 2 - Constructing Anatomical Manifolds; Cortical Surface Maps

Morning Session

9:00 - 10:00

David van Essen (Washington University)

"Surface-based approaches to spatial localization and registration in primate cerebral cortex"
Presentation (PowerPoint File)

10:00 - 10:30 Break
10:30 - 11:30

Denis Riviere (CEA Saclay, France)

"Sulcus Generation"
Presentation Files (Zip Archive)

11:30 - 12:30

James Duncan (Yale University)

"Geometric Strategies for Neuroanatomic Analysis from MRI"

12:30 - 2:00 Lunch (on your own)

Afternoon Session

2:00 - 3:00

Ken Stephenson (University of Tennessee,Knoxville)

"Conformal Mapping of Brain Surfaces: Circle Packing and the Riemann Mapping Theorem"
Presentation (PDF File)

3:00 - 3:30 Break
3:30 - 4:30

Tony Chan (UCLA)

"Conformal Brain Mapping using Variational Methods and PDEs."
Presentation (PowerPoint File)


Wednesday, July 14, 2004

Day 3 - Metrics on Anatomical Manifolds

Morning Session

9:00 - 10:00

David Mumford (Brown University)

"Metric Spaces on the space of "Shape""
Presentation (PDF File)

10:00 - 10:30 Break
10:30 - 11:30

Laurent Younes (Ecole Normale Supérieure, France)

"Moving templates"
Presentation Files (Zip Archive)

11:30 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:30

John Ashburner (Institute of Neurology)

"Voxel-based morphometry"
Presentation (PDF File)
Click here to see a transcript of the talk.

2:30 - 3:00 Break
3:00 - 4:00

Guillermo Sapiro (University of Minnesota)

"Implicit Brain Imaging"
Presentation (PDF File)
Click here to see a transcript of the talk.


Thursday, July 15, 2004

Day 4 - Physics of mappings

Morning Session

9:00 - 10:00

Darryl D. Holm (Los Alamos National Laboratory)

"Geodesic solitons in nonlinear internal-wave interactions and in computational anatomy"
Presentation (PowerPoint File)

10:00 - 11:00

Alain Trouvé (Ecole Normale Supérieure, France)

"Geodesic Motions and Vector Fields on Anatomical Manifolds"
Presentation (PDF File)

11:00 - 11:15 Break
11:15 - 12:15

P. S. Krishnaprasad (University of Maryland)

"Geometry of Collective Steering"

12:15 - 2:00 Lunch (Hosted by IPAM)

Afternoon Session

2:00 - 2:45

Anil Hirani (California Institute of Technology)

"Discrete Exterior Calculus and the Averaged Template Matching Equations "
Presentation (PDF File)

2:45 - 3:30

Mathieu Desbrun (University of Southern California)

"Applied Geometry: Discrete Differential Calculus for Graphics"

3:30 - 4:00 Break
4:00 - 5:00

James Gee (University of Pennsylvania)

"DTI and Tensor Registration"
Presentation Files (Zip Archive)


Friday, July 16, 2004

Day 5 - Statistical Inference and Shape

Morning Session

9:00 - 10:00

Olivier Faugeras (INRIA Sophia Antipolis)

"Approximating shape metrics and application to shape warping and empirical shape statistics"
Presentation Files (Zip Archive)

10:00 - 11:00

John Csernansky (Washington University)

"Computational Anatomy and Neuropsychiatric Disease: Probabilistic Assessment of Variation and Statistical Inference of Group Difference, Hemispheric Asymmetry, and Time-Dependent Change "
Presentation (PowerPoint File)

11:00 - 11:15 Break
11:15 - 12:15

Susumu Mori (Johns Hopkins University)

"Constructing Atlases and Measuring Structural Brain Changes via Diffusion Tensor Imaging"
Presentation (PowerPoint File)

12:15 - 2:00 Lunch (on your own)

Afternoon Session

2:00 - 2:45

Sarang Joshi (Florida State University)

"Statistics of Shape: Simple Statistics on Interesting Spaces"

2:45 - 3:30

Guido Gerig (University of North Carolina)

"Shape analysis to assess neurodevelopment and neurodegeneration"
Presentation (PowerPoint File)

3:30 - 4:00 Break
4:00 - 5:00

Nicholas Ayache (INRIA Sophia Antipolis)

"Brain Image Registration for Shape Analysis: Contributions from the Epidaure Laboratory at INRIA"
Audio (MP3 File, Podcast Ready)
Presentation (PDF File)
Presentation (PowerPoint File)


Saturday, July 17, 2004

Morning Session

9:00 - 9:15

Art Toga (UCLA)

"Multimodality Brain Atlases of Mice and Men"
Audio (MP3 File, Podcast Ready)

9:15 - 9:45

David Shattuck (UCLA)

"Cortical Surface Models from MRI"
Audio (MP3 File, Podcast Ready)

9:45 - 10:15

David Rex (UCLA)

"Structured and Automated Analysis Pipelines for Brain Images"

10:15 - 10:45 Break
10:45 - 11:15

J. Tilak Ratnanather (Johns Hopkins University)

"Dynamic Programming Applications in Defining Cortical Manifold Boundaries"
Presentation Files (Zip Archive)

11:15 - 11:45

Lei Wang (Washington University/School of Medicine)

"Statistical Computation and Inference on the Subcortical Surface"
Presentation (PDF File)
Click here to see a transcript of the talk.

11:45 - 12:15

Monica Hurdal (Florida State University)

"Cortical Surface Correction and Conformal Flat Mapping: TopoCV and CirclePack"
Audio (MP3 File, Podcast Ready)
Presentation (PowerPoint File)
Additional Presentation Files (Zip Archive)

Tutorials and Demonstrations of Software for Computational Anatomy
2:00 PM - 4:00 PM at LONI

2:00 - 4:00 Tutorials and Demonstrations

Week 2 - Functional Imaging


Monday, July 19, 2004

Day 6 - Acquisition and preprocessing

Morning Session

8:45 - 9:00 Welcome and Opening Remarks
9:00 - 10:15

Douglas Noll (University of Michigan)

"fMRI Acquisition"
Presentation Files (Zip Archive)

10:15 - 10:30 Break
10:30 - 11:45

Richard Buxton (University of California at San Diego)

"Hemodynamic Models"

11:45 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:45

Jean-Francois Mangin (CEA Saclay, France)

"Motion Correction"
Presentation (PowerPoint File)

2:45 - 4:00

Steven Strother (University of Minnesota)

"Effects of Preprocessing"
Presentation (PowerPoint File)

4:00 - 4:15 Break
4:15 - 5:30

Alan Yuille (UCLA)

"Bayesian Inference and Visual Processing"
Presentation (PowerPoint File)

5:30 - 7:30 Wine Reception (Hosted by IPAM)

Tuesday, July 20, 2004

Day 7 - Univariate models: Classical and Bayesian Approaches

Morning Session

9:00 - 10:15

Thomas D. Wickens (University of California at Berkeley)

"Statistical Modeling"
Presentation (PDF File)

10:15 - 10:30 Break
10:30 - 11:45

Steve Engel (UCLA)

"The linear systems model of fMRI: Strengths and Weaknesses"
Presentation (PowerPoint File)

11:45 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:45

Chris Genovese (Carnegie Mellon University)

"Bayesian Analysis of Neuroimaging Data"

2:45 - 4:00

Jan de Leeuw (UCLA)

"Hierarchical Modeling"

4:00 - 4:15 Break
4:15 - 5:30

Tom Mitchell (Carnegie Mellon University)

"Machine Learning Approaches to fMRI"
Presentation (PowerPoint File)


Wednesday, July 21, 2004

Day 8 - Univariate models: Temporal autocorrelation & Multiple Testing

Morning Session

9:00 - 10:15

Steve Smith (Oxford University)

"fMRI Time Series - Signal and Noise Modelling"
Presentation (PowerPoint File)

10:15 - 10:30 Break
10:30 - 11:45

Edward Bullmore (Cambridge University)

"Wavelets and functional MRI"
Presentation (PowerPoint File)

11:45 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:45

Thomas Nichols (University of Michigan)

"Group Modeling"
Presentation (PowerPoint File)

2:45 - 4:00

Keith Worsley (McGill University)

"Unified univariate and multivariate random field theory applied to canonical correlation SPMs from DBM"

4:00 - 4:15 Break
4:15 - 5:30

Jonathan Taylor (Stanford University)

"False Discovery Rate, Bayes and Multiple Comparisons"


Thursday, July 22, 2004

Day 9 - Multivariate techniques

Morning Session

9:00 - 10:15

Thomas Liu (University of California at San Diego)

"The Geometry of fMRI Statistics: Models, Efficiency, and Design "
Presentation (PDF File)

10:15 - 10:30 Break
10:30 - 11:45

Ivo Dinov (UCLA)

"Wavelet-Based Statistical Analysis of fMRI Data"
Presentation (PDF File)

11:45 - 1:30 Lunch (Hosted by IPAM)

Afternoon Session

1:30 - 2:45

Randy McIntosh (University of Toronto)

"Connectivity Modeling"
Presentation (PowerPoint File)

2:45 - 4:00

Will Penny (UCLA)

"Dynamic Causal Modeling"
Presentation (PDF File)

4:00 - 4:15 Break
4:15 - 5:30

Christian Beckmann (Oxford University)

"Independent Component Analysis for FMRI"
Presentation (PDF File)


Friday, July 23, 2004

Day 10 - Multimodal imaging

Morning Session

9:00 - 10:15

Richard Leahy (University of Southern California)

"Approaches to Inverse Problem Estimation"
Presentation (PDF File)

10:15 - 10:30 Break
10:30 - 11:45

Anders Dale (Massachusetts General Hospital)

"Relating Brain Imaging Signals to Biophysical Models of Neuronal Circuits"

11:45 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:45

David Boas (Massachusetts General Hospital)

"Diffuse Optical Imaging of Brain Activation: Approaches to Optimizing Image Sensitivity, Resolution, and Accuracy"
Presentation (PowerPoint File)

2:45 - 4:00

Mark Cohen (UCLA)

"Simultaneous EEG and fMRI acquisition"
Presentation (PowerPoint File)

4:00 - 4:15 Conclusion

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