Monday, March 22, 2004
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Morning Session
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8:00 - 8:45
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Check-In/Breakfast (Hosted by IPAM)
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8:45 - 9:00
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Welcome and Opening Remarks
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9:00 - 10:00
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Vicki H. Wysocki (University of Arizona)
"Data-mining a Set of Truth Spectra to Determine Peptide Fragmentation Chemistry"
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10:00 - 10:30
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Break
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10:30 - 11:30
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Peter Harrington (Ohio University)
"Chemometric Considerations in Proteomic Analyses by Mass Spectrometry"
Presentation (PowerPoint File)
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Shankar Subramaniam (University of California at San Diego)
"Contextual Analysis of Biochemical Networks in Mammalian Cells"
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2:30 - 3:00
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Break
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3:00 - 4:00
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Joseph Loo (UCLA)
"Strategies for Characterizing Proteins in Proteomics Research"
Presentation (PDF File)
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4:00 - 5:00
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To Be Announced
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Tuesday, March 23, 2004
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Morning Session
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8:00 - 9:00
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Check-In/Breakfast (Hosted by IPAM)
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9:00 - 10:00
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Tim Veenstra (National Cancer Institute)
"Analysis of the Human Serum Proteome"
Presentation (PowerPoint File)
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10:00 - 10:30
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Break
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10:30 - 11:30
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Tim Ting Chen (University of Southern California)
"Reliability of protein interaction data sets and prediction of protein domain interactions"
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Austin Yang (University of Southern California)
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2:30 - 3:00
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Break
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3:00 - 4:00
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Christoph Borchers (University of North Carolina)
"Novel Comprehensive Proteomic Approaches to Address Biological Problems"
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4:00 - 5:00
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Nouri Neamati (University of Southern California)
"Proteomics and the new frontiers"
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5:00 - 6:30
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Wine/Cheese Reception (Hosted by IPAM)
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6:30 - 7:30
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Ruedi Aebersold (Institute for Systems Biology) - Keynote Speaker
"Data Collection and Analysis for High Throughput Quantitative Proteomics: Current Status And Challenges"
Presentation (PowerPoint File)
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Wednesday, March 24, 2004
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Morning Session
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8:00 - 9:00
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Check-In/Breakfast (Hosted by IPAM)
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9:00 - 10:00
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Terry Speed (University of California at Berkeley)
"Deriving statistical models for predicting peptide tandem MS product ion intensities"
Presentation (PDF File)
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10:00 - 10:30
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Break
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10:30 - 11:30
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Hongyu Zhao (Yale University)
"Statistical Issues in the Analysis of Mass Spectrometry Data"
Presentation (PDF File)
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Benno Schwikowski (Institute for Systems Biology)
"Algorithms for the Multidimensional Analysis of Multidimensional LC-Mass Spectrometry Data"
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2:30 - 3:00
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Break
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3:00 - 4:00
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Fernando Pineda (Johns Hopkins University)
"Algorithms and Databases for rapid microorganism identification, Statistical model of proteolytic digestion for improved protein identification"
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4:00 - 5:00
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Michael Snyder (Yale University)
"Global analysis of Genomes and Proteomes"
Presentation (PowerPoint File)
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Thursday, March 25, 2004
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Morning Session
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8:00 - 9:00
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Check-In/Breakfast (Hosted by IPAM)
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9:00 - 10:00
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Pavel Pevzner (University of California at San Diego)
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10:00 - 10:30
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Break
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10:30 - 11:30
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Weixiong Zhang (Washington University)
"Discovering Temporal Gene Regulatory Networks"
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11:30 - 1:30
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Lunch (Hosted by IPAM)
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Afternoon Session
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1:30 - 2:30
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Vineet Bafna (University of California at San Diego)
"De novo interpretation of tandem mass spectra"
Presentation (PowerPoint File)
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2:30 - 3:00
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Break
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3:00 - 4:00
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Nathan Edwards (Applied Biosystems)
"Generating Peptide Candidates from Protein Sequence Databases for Protein Identification via Mass Spectrometry"
Presentation (PowerPoint File)
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4:00 - 5:00
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Alex Hartemink (Duke University)
"Classification in high-dimensional spaces: joint classification and feature selection"
Presentation (PDF File)
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Friday, March 26, 2004
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Morning Session
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8:00 - 9:00
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Check-In/Breakfast (Hosted by IPAM)
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9:00 - 10:00
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Edward Marcotte (University of Texas, Austin)
"The structure and dynamics of genome-wide protein networks"
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10:00 - 10:30
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Break
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10:30 - 11:30
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Fengzhu Sun (University of Southern California)
"An Integrated Approach for Protein Function Prediction "
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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William Noble (University of Washington)
"A kernel framework for genomic data fusion"
Presentation (PowerPoint File)
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2:30 - 3:00
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Break
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3:00 - 4:00
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Golan Yona (Cornell University)
"BIOZON: a unified knowledge resource on DNA sequences, proteins, complexes and cellular pathways"
Presentation (PDF File)
Presentation (PowerPoint File)
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4:00 - 5:00
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Bin Ma (University of West Ontario)
"PEAKS: Accurate de novo sequencing using MS/MS"
Presentation (PowerPoint File)
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