Monday, May 10, 2004
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Morning Session
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8:30 - 9:15
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Check-In/Breakfast (Hosted by IPAM)
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9:15 - 9:30
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Welcome and Opening Remarks
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9:30 - 10:30
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Arthur Lesk (Cambridge University)
"Structure and Evolution of the Globins: We thought we understood them"
Presentation (PDF File)
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10:30 - 11:00
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Break
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11:00 - 12:00
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Ken Dill (University of California at San Francisco)
"Protein Folding: From physics to conformational searching."
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12:00 - 2:00
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Lunch (on your own)
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Afternoon Session
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2:00 - 3:00
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George Rose (Johns Hopkins University)
"Assessing the protein folding problem - theory and simulations"
Presentation (PowerPoint File)
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3:00 - 3:30
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Break
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3:30 - 4:30
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Ingo Ruczinski (Johns Hopkins University)
"Protein structure prediction using ROSETTA"
Presentation (PowerPoint File)
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4:30 - 4:45
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Break
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4:45 - 5:45
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Steven Brenner (University of California at Berkeley)
"Ancient protein evolutionary relationships inferred from structure"
Presentation (PDF File)
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5:45
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Wine/Cheese Reception (Hosted by IPAM)
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Tuesday, May 11, 2004
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Morning Session
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8:30 - 9:30
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Check-In/Breakfast (Hosted by IPAM)
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9:30 - 10:30
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Jose N. Onuchic (University of California at San Diego)
"Exploring the protein funnel energy landscape for folding and function."
Presentation (PowerPoint File)
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10:30 - 11:00
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Break
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11:00 - 12:00
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Angel Garcia (Los Alamos National Laboratory)
" Simulation of the folding / unfolding thermodynamics of protein A "
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12:00 - 2:00
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Lunch (on your own)
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Afternoon Session
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2:00 - 3:00
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Scott Schmidler (Duke University)
"Statistical Shape Methods for Datamining in Protein Structure Databases"
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3:00 - 3:30
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Break
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3:30 - 4:30
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Edward Marcotte (University of Texas)
"Working towards accurate protein interaction maps and the human interactome"
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4:30 - 5:30
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Adam Godzik (Burnham Institute)
"FATCAT : Flexible structure alignment of proteins: lessons for comparative modeling and structural genomics""
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Wednesday, May 12, 2004
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Morning Session
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8:30 - 9:30
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Check-In/Breakfast (Hosted by IPAM)
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9:30 - 10:30
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Patrick Aloy (European Molecular Biology Laboratory)
"Structure-based assembly of protein complexes and networks"
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10:30 - 11:00
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Break
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11:00 - 12:00
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Ruben Abagyan (Scripps College)
"Predicting induced fit in docking and loop prediction"
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12:00 - 2:00
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Lunch (on your own)
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Afternoon Session
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2:00 - 3:00
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Jeffrey Skolnick (State University of New York, Buffalo)
"Prediction of Protein Structure and Function on a Proteomic Scale"
Presentation (PowerPoint File)
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3:00 - 3:30
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Break
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3:30 - 4:30
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Patsy Babbitt (University of California at San Francisco)
"A Model Linking Structure and Function in Mechanistically Diverse Enzyme Superfamilies"
Presentation (PDF File)
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4:30 - 4:45
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Break
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4:45 - 5:45
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John Moult (University of Maryland)
"Annotation of Protein Misfunction: SNPs, Databases and Disease"
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5:45
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Dinner (Hosted by IPAM)
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Thursday, May 13, 2004
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Morning Session
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8:30 - 9:30
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Check-In/Breakfast (Hosted by IPAM)
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9:30 - 10:30
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Oliver Lichtarge (Baylor College of Medicine)
"Towards Large-Scale Identification and Specific Engineering of Protein Functional Sites"
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10:30 - 11:00
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Break
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11:00 - 12:00
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Jacque Fetrow (Wake Forest University)
"Synergies of computational and chemical proteomics methods: analysis of yeast serine hydrolases"
Presentation (PowerPoint File)
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12:00 - 2:00
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Lunch (on your own)
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Afternoon Session
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2:00 - 3:00
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James Watson (European Bioinformatics Institute)
"Case Studies In Assigning Function From Structure In Structural Genomics"
Presentation (PowerPoint File)
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3:00 - 3:30
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Break
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3:30 - 4:30
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Alexander Kister (Rutgers University)
"The common structural and sequence features of the sandwich and barrel proteins. Application to the structural prediction and sequence classification"
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Friday, May 14, 2004
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Morning Session
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8:30 - 9:30
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Check-In/Breakfast (Hosted by IPAM)
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9:30 - 10:30
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Sarah Teichmann (MRC Laboratory)
"Evolution of Multi-Domain Proteins"
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10:30 - 11:00
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Break
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11:00 - 12:00
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Nick Grishin (University of Texas, Southwestern Medical Center)
""Remote homology inference: what are the limits?""
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12:00 - 1:00
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Mansoor Saqi (Barts and The London School of Medicine and Dentistry)
"Structural diversity within protein superfamilies: implications for remote homolog detection"
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1:00
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Conclusion
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