Monday, January 09, 2006
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Morning Session
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8:00 - 8:50
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Check-In/Breakfast (Hosted by IPAM)
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8:50 - 9:00
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Welcome and Opening Remarks
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9:00 - 10:00
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Jun Liu (Harvard University)
"Sequence information, histone acetylation, and gene expression"
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10:00 - 10:30
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Break
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10:30 - 11:30
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Sam Karlin (Stanford University)
"GENOME COMPARISONS AND ANALYSIS"
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Amir Dembo (Stanford University)
"Sequence and Structure Matching: Applications of Probability Theory"
Audio (MP3 File, Podcast Ready)
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2:30 - 3:00
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Break
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3:00 - 4:00
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Wing Wong (Stanford University)
"Studies in genomic regulatory systems"
Audio (MP3 File, Podcast Ready)
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4:00 - 5:00
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Kenneth Lange (UCLA)
"Dictionary Models for Motif Finding and Haplotyping"
Audio (MP3 File, Podcast Ready)
Presentation (PDF File)
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5:00 - 7:00
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Wine/Cheese Reception (Hosted by IPAM)
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Tuesday, January 10, 2006
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Morning Session
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8:30 - 9:00
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Continental Breakfast
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9:00 - 10:00
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Mayetri Gupta (University of North Carolina)
"From genomic sequence to gene regulation"
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10:00 - 10:30
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Break
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10:30 - 11:30
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Simon Tavaré (University of Southern California)
"Genome-wide associations of gene expression variation in humans"
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Terry Speed (UC Berkeley)
"Bioinformatic analysis of proteins targeted to the host erythrocyte in human malaria parasites"
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2:30 - 3:00
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Break
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3:00 - 4:00
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Frederick Roth (Harvard Medical School)
"Genome-Scale Analysis of Alternative Splicing Regulation"
Presentation (PowerPoint File)
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4:00 - 5:00
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Sunduz Keles (University of Wisconsin-Madison)
"Mixture modeling for genome-wide localization of transcription factors"
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Wednesday, January 11, 2006
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Morning Session
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8:30 - 9:00
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Continental Breakfast
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9:00 - 10:00
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Haiyan Huang (UC Berkeley)
"Using comparative genomics for analyzing Human non-coding sequences"
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10:00 - 10:30
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Break
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10:30 - 11:30
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David Haussler (UC Santa Cruz)
"Ultraconserved elements, living fossil transposons, distal enhancers, and mysterious RNA genes: reconstructing the detailed evolutionary history of the human genome."
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Andrew Neuwald (Cold Spring Harbor Laboratory)
"Predicting biological mechanisms through Bayesian inference of evolutionary constraints "
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2:30 - 3:00
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Set Up for Poster Session
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3:00 - 4:00
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Shamil Sunyaev (Harvard Medical School)
"Evolutionary analysis of genome variation"
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4:00 - 5:00
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Carlos Bustamante (Cornell University)
""Population Genetic Inference from SNP Data""
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5:00 - 7:00
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Dinner/ Poster Session
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Thursday, January 12, 2006
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Morning Session
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8:30 - 9:00
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Continental Breakfast
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9:00 - 10:00
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Xiaole Liu (Dana-Farber Cancer Institute)
"MATCh: Model-based Analysis of Tiling-arrays for ChIP-chip"
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10:00 - 10:30
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Break
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10:30 - 11:30
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Harmen Bussemaker (Columbia University)
"CONDITION-SPECIFIC REGULATION OF mRNA STABILITY IN YEAST"
Presentation (PDF File)
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Michael Elowitz (California Institute of Technology)
"Gene Circuits at the Single Cell Level"
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2:30 - 3:00
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Break
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3:00 - 4:00
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Hao Li (University of California, San Francisco)
"Regulatory Complexity of Yeast Transcription Networks"
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4:00 - 5:00
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Terence Hwa (University of California, San Diego)
"Quantitative Study of Gene Regulation"
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Friday, January 13, 2006
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Morning Session
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8:30 - 9:00
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Continental Breakfast
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9:00 - 10:00
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Nancy Zhang (UC Berkeley)
""modified BIC towards change-point problems""
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10:00 - 10:30
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Break
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10:30 - 11:30
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Michael Waterman (University of Southern California)
"Whole Genome Optical Mapping"
Presentation (PowerPoint File)
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11:30 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Trey G. Ideker (University of California at San Diego)
"Protein Network Comparative Genomics"
Presentation (PowerPoint File)
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2:30 - 3:00
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Break
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3:00 - 4:00
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Ker-chau Li (UCLA)
"Liquid association and eQTL"
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4:00
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Evening at the Getty (Non-IPAM Event)
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