Proteomics Tutorials

March 9 - 12, 2004

Schedule

All times in this Schedule are Pacific Time (PT)

Tuesday, March 9, 2004

High Throughput Technologies I

Morning Session

8:00 - 9:00 Check-In/Breakfast (Hosted by IPAM)
9:00 - 9:30 Welcome and Opening Remarks
9:30 - 10:30
10:30 - 11:00 Break
11:00 - 12:00
12:00 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:30
Tim Ting Chen (University of Southern California)

Mass Spectrometry Data Analysis
PDF Presentation

2:30 - 3:00 Break
3:00 - 4:00
Tim Ting Chen (University of Southern California)

Algorithms for Peptide Sequencing
PDF Presentation


Wednesday, March 10, 2004

Structural Biology

Morning Session

8:30 - 9:30 Continental Breakfast
9:30 - 10:30
Edward Marcotte (University of Texas, Austin)

Protein Folds and Interactions
Presentation (PowerPoint File)

10:30 - 11:00 Break
11:00 - 12:00
David Wild (Keck Graduate Institute)

Protein Structure Prediction
Presentation (PowerPoint File)

12:00 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:30
David Wild (Keck Graduate Institute)

Protein Structure Prediction
Presentation (PowerPoint File)

2:30 - 3:00 Break
3:00 - 4:00
Edward Marcotte (University of Texas, Austin)

Protein Folds and Interactions
Presentation (PowerPoint File)

4:00 - 4:15 Break
4:15 - 5:15
David Eisenberg (UCLA) - Keynote Speaker

Protein Interactions
Presentation (PowerPoint File)

5:15 - 7:15 Wine/Cheese Reception (Hosted by IPAM)

Thursday, March 11, 2004

Databases

Morning Session

8:30 - 9:30 Continental Breakfast
9:30 - 10:30
Alex Bateman (Sanger Institute)

Protein domains
Presentation (PowerPoint File)

10:30 - 11:00 Break
11:00 - 12:00
Herbert Sauro (Keck Graduate Institute)

Requirements of Systems Biology from Databases
Presentation (PowerPoint File)

12:00 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:30
Alex Bateman (Sanger Institute)

Protein domains
Presentation (PowerPoint File)

2:30 - 3:00 Break
3:00 - 4:00
Cameron Wellock (Keck Graduate Institute)

Overview of Enzyme, Protein and Network Databases
Presentation (PowerPoint File)


Friday, March 12, 2004

High Throughput Technologies II

Morning Session

8:30 - 9:30 Continental Breakfast
9:30 - 10:30
Nouri Neamati (University of Southern California)

Technologies - 2d Gel Experiments

10:30 - 11:00 Break
11:00 - 12:00
Nouri Neamati (University of Southern California)

Technologies - 2d Gel Experiments

12:00 - 1:30 Lunch (on your own)

Afternoon Session

1:30 - 2:30
Austin Yang (University of Southern California)

High-Throughput and Large-Scale Proteomics
Presentation (PowerPoint File)

2:30 - 3:00 Break
3:00 - 4:00
Austin Yang (University of Southern California)

High-Throughput and Large-Scale Proteomics
Presentation (PowerPoint File)

4:00 - 4:30 Conclusion