Mini-Workshop: Cancer Genomics - IPAM

Mini-Workshop: Cancer Genomics

Part of the Long Program Mathematical and Computational Approaches in High-Throughput Genomics
October 31 - November 1, 2011

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, October 31, 2011

Morning Session

08:00-08:50
Check-In/Light Breakfast (Hosted by IPAM)
08:50-09:00
Welcome and Opening Remarks
10:00-10:15
Break
10:15-11:05
Stephen Wong (The Methodist Hospital Research Institute)
A systematic strategy of transcriptional response analysis to identify known drugs for alternate uses in cancer treatment
11:15-11:30
Break
11:30-12:20
Rachel Karchin (Johns Hopkins University)
Can high-throughput genomics data identify new therapeutic targets in cancer?

Afternoon Session

12:30-14:30
Lunch (on your own)
14:30-15:20
Ben Raphael (Brown University)
Characterization of Somatic Mutations in Cancer Genomes
15:30-16:00
Break
16:00-16:50
Niko Beerenwinkel (ETH Zürich)
Evolutionary dynamics of cancer
17:00-18:30
Reception and Poster Session (Hosted by IPAM)

Tuesday, November 1, 2011

Morning Session

08:00-09:00
Continental Breakfast
09:00-09:50
Terry Speed (University of California, Berkeley (UC Berkeley))
Dealing with the GC-content bias in second-generation DNA sequence data
10:00-10:15
Break
10:15-11:05
Nancy Zhang (Stanford University)
Copy number profiling in cancer genomics
11:15-11:30
Break
11:30-12:20
Obi Griffith (Lawrence Berkeley Laboratory)
Integration of Omic Data for Prediction of Drug Response in Breast Cancer

Afternoon Session

12:30-14:30
Lunch (on your own)
14:30-15:20
Rob Gentleman (Fred Hutchinson Cancer Research Center)
A Comparison of 454 and Illumina for RNA-sequencing
15:30-16:00
Break
16:00-16:50
Cenk Sahinalp (Indiana University)
Population Scale Detection of Common and Rare Genomic Rearrangements and Transcriptomic Aberrations
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