Mini-Workshop: Cancer Genomics

October 31 - November 1, 2011

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, October 31, 2011

Morning Session

8:00 - 8:50 Check-In/Breakfast (Hosted by IPAM)
8:50 - 9:00 Welcome and Opening Remarks
10:00 - 10:15 Break
10:15 - 11:05
11:15 - 11:30 Break
11:30 - 12:20
12:30 - 2:30 Lunch (on your own)

Afternoon Session

2:30 - 3:20
3:30 - 4:00 Break
4:00 - 4:50
Niko Beerenwinkel (ETH Zürich)

Evolutionary dynamics of cancer

5:00 - 6:30 Reception and Poster Session (Hosted by IPAM)

Tuesday, November 1, 2011

Morning Session

8:00 - 9:00 Continental Breakfast
9:00 - 9:50
Terry Speed (University of California, Berkeley (UC Berkeley))

Dealing with the GC-content bias in second-generation DNA sequence data
PDF Presentation

10:00 - 10:15 Break
10:15 - 11:05
Nancy Zhang (Stanford University)

Copy number profiling in cancer genomics

11:15 - 11:30 Break
11:30 - 12:20
12:30 - 2:30 Lunch (on your own)

Afternoon Session

2:30 - 3:20
Rob Gentleman (Fred Hutchinson Cancer Research Center)

A Comparison of 454 and Illumina for RNA-sequencing

3:30 - 4:00 Break
4:00 - 4:50