Sequence Analysis Toward System Biology - IPAM

Sequence Analysis Toward System Biology

January 9 - 13, 2006

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, January 9, 2006

Morning Session

08:00-08:50
Check-In/Light Breakfast (Hosted by IPAM)
08:50-09:00
Welcome and Opening Remarks
09:00-10:00
Jun Liu (Stanford University)
Sequence information, histone acetylation, and gene expression
10:00-10:30
Break
10:30-11:30
Sam Karlin (Stanford University)
GENOME COMPARISONS AND ANALYSIS
11:30-13:30
Lunch (on your own)

Afternoon Session

13:30-14:30
Amir Dembo (Stanford University)
Sequence and Structure Matching: Applications of Probability Theory
14:30-15:00
Break
15:00-16:00
Wing Wong (Stanford University)
Studies in genomic regulatory systems
16:00-17:00
Kenneth Lange (University of California, Los Angeles (UCLA))
Dictionary Models for Motif Finding and Haplotyping
17:00-19:00
Wine/Cheese Reception (Hosted by IPAM)

Tuesday, January 10, 2006

Morning Session

08:30-09:00
Continental Breakfast
09:00-10:00
Mayetri Gupta (University of North Carolina)
From genomic sequence to gene regulation
10:00-10:30
Break
10:30-11:30
Simon Tavaré (University of Southern California (USC))
Genome-wide associations of gene expression variation in humans
11:30-13:30
Lunch (on your own)

Afternoon Session

13:30-14:30
Terry Speed (UC Berkeley)
Bioinformatic analysis of proteins targeted to the host erythrocyte in human malaria parasites
14:30-15:00
Break
15:00-16:00
Frederick Roth (Harvard Medical School)
Genome-Scale Analysis of Alternative Splicing Regulation
16:00-17:00
Sunduz Keles (University of Wisconsin-Madison)
Mixture modeling for genome-wide localization of transcription factors

Wednesday, January 11, 2006

Morning Session

08:30-09:00
Continental Breakfast
09:00-10:00
Haiyan Huang (UC Berkeley)
Using comparative genomics for analyzing Human non-coding sequences
10:00-10:30
Break
10:30-11:30
David Haussler (UC Santa Cruz)
Ultraconserved elements, living fossil transposons, distal enhancers, and mysterious RNA genes: reconstructing the detailed evolutionary history of the human genome.
11:30-13:30
Lunch (on your own)

Afternoon Session

13:30-14:30
Andrew Neuwald (Cold Spring Harbor Laboratory)
Predicting biological mechanisms through Bayesian inference of evolutionary constraints
14:30-15:00
Set Up for Poster Session
15:00-16:00
Shamil Sunyaev (Brigham and Women's Hospital)
Evolutionary analysis of genome variation
16:00-17:00
Carlos Bustamante (Cornell University)
Population Genetic Inference from SNP Data
17:00-19:00
Dinner/ Poster Session

Thursday, January 12, 2006

Morning Session

08:30-09:00
Continental Breakfast
09:00-10:00
Xiaole Liu (Dana-Farber Cancer Institute)
MATCh: Model-based Analysis of Tiling-arrays for ChIP-chip
10:00-10:30
Break
10:30-11:30
Harmen Bussemaker (Columbia University)
CONDITION-SPECIFIC REGULATION OF mRNA STABILITY IN YEAST
11:30-13:30
Lunch (on your own)

Afternoon Session

13:30-14:30
Michael Elowitz (California Institute of Technology)
Gene Circuits at the Single Cell Level
14:30-15:00
Break
15:00-16:00
Hao Li (University of California, San Francisco)
Regulatory Complexity of Yeast Transcription Networks
16:00-17:00
Terence Hwa (University of California, San Diego)
Quantitative Study of Gene Regulation

Friday, January 13, 2006

Morning Session

08:30-09:00
Continental Breakfast
09:00-10:00
Nancy Zhang (Stanford University)
modified BIC towards change-point problems
10:00-10:30
Break
10:30-11:30
Michael Waterman (University of Southern California)
Whole Genome Optical Mapping
11:30-13:30
Lunch (on your own)

Afternoon Session

13:30-14:30
Trey G. Ideker (University of California, San Diego (UCSD))
Protein Network Comparative Genomics
14:30-15:00
Break
15:00-16:00
Ker-chau Li (UCLA)
Liquid association and eQTL
16:00
Evening at the Getty (Non-IPAM Event)
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