Sequence Analysis Toward System Biology

January 9 - 13, 2006

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, January 9, 2006

Morning Session
8:00 - 8:50 Check-In/Breakfast (Hosted by IPAM)
8:50 - 9:00 Welcome and Opening Remarks
9:00 - 10:00
10:00 - 10:30 Break
10:30 - 11:30
Sam Karlin (Stanford University)

GENOME COMPARISONS AND ANALYSIS

11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
2:30 - 3:00 Break
3:00 - 4:00
4:00 - 5:00
5:00 - 7:00 Wine/Cheese Reception (Hosted by IPAM)

Tuesday, January 10, 2006

Morning Session
8:30 - 9:00 Continental Breakfast
9:00 - 10:00
Mayetri Gupta (University of North Carolina)

From genomic sequence to gene regulation

10:00 - 10:30 Break
10:30 - 11:30
Simon Tavaré (University of Southern California)

Genome-wide associations of gene expression variation in humans

11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
2:30 - 3:00 Break
3:00 - 4:00
Frederick Roth (Harvard Medical School)

Genome-Scale Analysis of Alternative Splicing Regulation
Presentation (PowerPoint File)
4:00 - 5:00
Sunduz Keles (University of Wisconsin-Madison)

Mixture modeling for genome-wide localization of transcription factors


Wednesday, January 11, 2006

Morning Session
8:30 - 9:00 Continental Breakfast
9:00 - 10:00
10:00 - 10:30 Break
10:30 - 11:30
11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
2:30 - 3:00 Set Up for Poster Session
3:00 - 4:00
Shamil Sunyaev (Harvard Medical School)

Evolutionary analysis of genome variation

4:00 - 5:00
Carlos Bustamante (Cornell University)

"Population Genetic Inference from SNP Data"

5:00 - 7:00 Dinner/ Poster Session

Thursday, January 12, 2006

Morning Session
8:30 - 9:00 Continental Breakfast
9:00 - 10:00
Xiaole Liu (Dana-Farber Cancer Institute)

MATCh: Model-based Analysis of Tiling-arrays for ChIP-chip

10:00 - 10:30 Break
10:30 - 11:30
Harmen Bussemaker (Columbia University)

CONDITION-SPECIFIC REGULATION OF mRNA STABILITY IN YEAST
PDF Presentation
11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
Michael Elowitz (California Institute of Technology)

Gene Circuits at the Single Cell Level

2:30 - 3:00 Break
3:00 - 4:00
Hao Li (University of California, San Francisco)

Regulatory Complexity of Yeast Transcription Networks

4:00 - 5:00
Terence Hwa (University of California, San Diego)

Quantitative Study of Gene Regulation


Friday, January 13, 2006

Morning Session
8:30 - 9:00 Continental Breakfast
9:00 - 10:00
10:00 - 10:30 Break
10:30 - 11:30
Michael Waterman (University of Southern California)

Whole Genome Optical Mapping
Presentation (PowerPoint File)
11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
Trey G. Ideker (University of California at San Diego)

Protein Network Comparative Genomics
Presentation (PowerPoint File)
2:30 - 3:00 Break
3:00 - 4:00
4:00 Evening at the Getty (Non-IPAM Event)