Workshop I: Next-generation Sequencing Technology and Algorithms for Primary Data Analysis

October 3 - 6, 2011

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, October 3, 2011

Morning Session

8:00 - 9:00 Check-In/Breakfast (Hosted by IPAM)
9:00 - 9:30 Welcome and Opening Remarks by Jay Shendure
9:30 - 10:20
10:30 - 10:45 Break
10:45 - 11:35
11:45 - 12:00 Break
12:00 - 12:50
Jim Kent (University of California, Santa Cruz (UC Santa Cruz))

Visualizing large data sets from next generation sequencing.
PDF Presentation

1:00 - 2:30 Lunch (on your own)

Afternoon Session

2:30 - 3:20
David Haussler (University of California, Santa Cruz (UC Santa Cruz))

Cancer and Evolutionary Genomics
PDF Presentation

3:30 - 4:00 Break
4:00 - 4:50
Rafael Irizarry (Johns Hopkins University)

 
PDF Presentation

5:00 - 6:30 Reception and Poster Session (Hosted by IPAM)

Tuesday, October 4, 2011

Morning Session

8:00 - 9:00 Continental Breakfast
9:00 - 9:50
Daniel Zerbino (University of California, Santa Cruz (UC Santa Cruz))

 

10:00 - 10:15 Break
10:15 - 11:05
Srinivas Aluru (Indian Institute of Technology, Bombay)

Error Correction Algorithms for Next Generation Sequencing
PDF Presentation

11:15 - 11:30 Break
11:30 - 12:20
12:30 - 2:00 Lunch (on your own)

Afternoon Session

2:00 - 2:50
Phil Green (University of Washington)

 

3:00 - 3:15 Break
3:15 - 4:05

Wednesday, October 5, 2011

Morning Session

8:00 - 9:00 Continental Breakfast
9:00 - 9:50
Elaine Mardis (Washington University in St.Louis - School of Medicine)

Charting tumor genome evolution from massively parallel sequencing data

10:00 - 10:15 Break
10:15 - 11:05
Mark Depristo (Broad Institute)

Data processing and analysis of genetic variation using next-generation DNA sequencing"
PDF Presentation

11:15 - 11:30 Break
11:30 - 12:20
12:30 - 2:30 Lunch (on your own)

Afternoon Session

2:30 - 3:20
3:30 - 4:00 Break

Thursday, October 6, 2011

Morning Session

8:00 - 9:00 Continental Breakfast
9:00 - 9:50
10:00 - 10:15 Break
10:15 - 11:05
Ruiqiang Li (Novogene)

 
PDF Presentation

11:15 - 11:30 Break
11:30 - 12:20
Cristina Pop (Stanford University)

 

12:30 - 2:30 Lunch (on your own)

Afternoon Session

2:30 - 3:20
3:30 - 4:00 Break
4:00 - 4:50