Workshop I: Next-generation Sequencing Technology and Algorithms for Primary Data Analysis - IPAM

Workshop I: Next-generation Sequencing Technology and Algorithms for Primary Data Analysis

Part of the Long Program Mathematical and Computational Approaches in High-Throughput Genomics
October 3 - 6, 2011

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, October 3, 2011

Morning Session

08:00-09:00
Check-In/Light Breakfast (Hosted by IPAM)
09:00-09:30
Welcome and Opening Remarks by Jay Shendure
09:30-10:20
Radoje Drmanac (Complete Genomics, Inc.)
Complete Genomics’ approach for sequencing thousands of human genomes and determining accurate genome variant lists
10:30-10:45
Break
10:45-11:35
Chris Saunders (Illumina, Inc. )
Illumina Sequence Analysis: From Imaging to Somatic Variant Discovery
11:45-12:00
Break

Afternoon Session

12:00-12:50
Jim Kent (University of California, Santa Cruz (UC Santa Cruz))
Visualizing large data sets from next generation sequencing.
13:00-14:30
Lunch (on your own)
14:30-15:20
David Haussler (University of California, Santa Cruz (UC Santa Cruz))
Cancer and Evolutionary Genomics
15:30-16:00
Break
16:00-16:50
Rafael Irizarry (Johns Hopkins University)
Title not available
17:00-18:30
Reception and Poster Session (Hosted by IPAM)

Tuesday, October 4, 2011

Morning Session

08:00-09:00
Continental Breakfast
09:00-09:50
Daniel Zerbino (University of California, Santa Cruz (UC Santa Cruz))
Title not available
10:00-10:15
Break
10:15-11:05
Srinivas Aluru (Indian Institute of Technology, Bombay)
Error Correction Algorithms for Next Generation Sequencing
11:15-11:30
Break
11:30-12:20
Moran Yassour (Broad Institute)
Characterizing transcriptomes from high throughput sequencing data: from yeast to mammals

Afternoon Session

12:30-14:00
Lunch (on your own)
14:00-14:50
Phil Green (University of Washington)
Title not available
15:00-15:15
Break
15:15-16:05
Christopher Lee (University of California, Los Angeles (UCLA))
Phenotype sequencing: identifying the genes that cause a phenotype directly from pooled sequencing of independent mutants

Wednesday, October 5, 2011

Morning Session

08:00-09:00
Continental Breakfast
09:00-09:50
Elaine Mardis (Washington University in St.Louis - School of Medicine)
Charting tumor genome evolution from massively parallel sequencing data
10:00-10:15
Break
10:15-11:05
Mark Depristo (Broad Institute)
Data processing and analysis of genetic variation using next-generation DNA sequencing
11:15-11:30
Break
11:30-12:20
Can Alkan (University of Washington)
Next-generation sequence characterization of complex genome structural variation

Afternoon Session

12:30-14:30
Lunch (on your own)
14:30-15:20
Jonas Korlach (Pacific Biosciences)
Harnessing Kinetic Information in Single-Molecule, Real-Time (SMRT™) Sequencing
15:30-16:00
Break

Thursday, October 6, 2011

Morning Session

08:00-09:00
Continental Breakfast
09:00-09:50
David Jaffe (Broad Institute)
High-quality draft assemblies of large and small genomes from massively parallel DNA sequence data
10:00-10:15
Break
10:15-11:05
Ruiqiang Li (Novogene)
Title not available
11:15-11:30
Break
11:30-12:20
Cristina Pop (Stanford University)
Title not available

Afternoon Session

12:30-14:30
Lunch (on your own)
14:30-15:20
Steven Jones (BC Cancer Agency)
Identification of recurrent mutational events in human cancers
15:30-16:00
Break
16:00-16:50
Earl Hubbell (Life Technologies)
Computational Challenges for Scalable Semiconductor Sequencing
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