Workshop II: Transcriptomics and Epigenomics

October 25 - 28, 2011

Schedule


Tuesday, October 25, 2011

9:15 - 10:05
Matteo Pellegrini (University of California, Los Angeles (UCLA))

Transgenerational Inheritance of DNA Methylation
Presentation (PowerPoint File)

10:45 - 11:35
Joseph Ecker (The Salk Institute for Biological Studies)

Transgenerational Epigenetic Instability is a Source of Novel Methylation Variants

1:00 - 1:50
2:30 - 3:20
Wei Li (Baylor College of Medicine)

Transcriptome Instability in Prostate Cancer


Wednesday, October 26, 2011

9:00 - 9:50
10:30 - 11:20
Nir Friedman (Hebrew University)

Chromatin and Transcription: Adventures in Disentailing Complex Feedback Loops

12:00 - 12:50
Tao Jiang (University of California, Riverside (UC Riverside))

A Combinatorial Approach to the Inference of Isoforms from Short Sequence Reads
PDF Presentation

2:30 - 3:20
Sandrine Dudoit (University of California, Berkeley (UC Berkeley))

Normalization and Differential Expression in RNA-Seq

4:00 - 4:50
Christina Kendziorski (University of Wisconsin-Madison)

Identifying DE Isoforms in an RNA-seq experiment
PDF Presentation


Thursday, October 27, 2011

9:00 - 9:50
Zhiping Weng (University of Massachusetts Medical School)

Computational Analysis of Human Epigenome and Regulate
PDF Presentation

10:30 - 11:20
Yuval Kluger (Yale University)

 

12:00 - 12:50
2:30 - 3:20
Henrik Bengtsson (University of California, San Francisco (UCSF))

Single-Pair Parent-Specific Copy Number Analysis
PDF Presentation

4:00 - 4:50

Friday, October 28, 2011

9:00 - 9:50
10:30 - 11:20
12:00 - 12:50
Adam Roberts (University of California, Berkeley (UC Berkeley))

eXpress
PDF Presentation

2:30 - 3:20
Hongkai Ji (Johns Hopkins University)

Differential principal component analysis of ChIP-seq
Presentation (PowerPoint File)

4:00 - 4:50