Graduate Summer School: Mathematics in Brain Imaging - IPAM

Graduate Summer School: Mathematics in Brain Imaging

July 12 - 23, 2004

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, July 12, 2004

Morning Session

00:00-00:00
week1|Week 1 - Computational Anatomy
01:00-01:00
td1|Day 1 - Introduction to Computational Anatomy
08:45
09:00-09:15
Welcome and Opening Remarks
09:15-10:15
Michael Miller (Johns Hopkins University)
The Emerging Field of Computational Anatomy
10:15-10:45
Break
10:45-11:45
Paul Thompson (University of California, Los Angeles (UCLA))
Medical and Neuroscience Applications of Computational Anatomy
11:45-14:00
Lunch (on your own)

Afternoon Session

14:00-15:00
Jerry Prince (Johns Hopkins University)
Surface Segmentation and Topology
15:00-15:15
Break
15:15-16:15
Bruce Fischl (Harvard Medical School)
Segmenting Anatomical Surfaces and Volumes with Markov Models
16:30-18:30
Wine Reception (Hosted by IPAM)

Tuesday, July 13, 2004

Morning Session

01:00-01:00
td2|Day 2 - Constructing Anatomical Manifolds; Cortical Surface Maps
09:00-10:00
David van Essen (Washington University/School of Medicine)
Surface-based approaches to spatial localization and registration in primate cerebral cortex
10:00-10:30
Break
10:30-11:30
Denis Riviere (CEA, Orsay France)
Sulcus Generation
11:30-12:30
James Duncan (Yale University)
Geometric Strategies for Neuroanatomic Analysis from MRI

Afternoon Session

12:30-14:00
Lunch (on your own)
14:00-15:00
Ken Stephenson (University of Tennessee,Knoxville)
Conformal Mapping of Brain Surfaces: Circle Packing and the Riemann Mapping Theorem
15:00-15:30
Break
15:30-16:30
Tony Chan (King Abdullah Univ. of Science and Technology (KAUST))
Conformal Brain Mapping using Variational Methods and PDEs.

Wednesday, July 14, 2004

Morning Session

01:00-01:00
td3|Day 3 - Metrics on Anatomical Manifolds
09:00-10:00
David Mumford (Brown University)
Metric Spaces on the space of Shape
10:00-10:30
Break
10:30-11:30
Laurent Younes (Johns Hopkins University)
Moving templates
11:30-13:30
Lunch (on your own)

Afternoon Session

13:30-14:30
John Ashburner (Institute of Neurology)
Voxel-based morphometry
14:30-15:00
Break
15:00-16:00
Guillermo Sapiro (University of Minnesota, Twin Cities)
Implicit Brain Imaging

Thursday, July 15, 2004

Morning Session

01:00-01:00
td4|Day 4 - Physics of mappings
09:00-10:00
Darryl D. Holm (LANL/Imperial College London)
Geodesic solitons in nonlinear internal-wave interactions and in computational anatomy
10:00-11:00
Alain Trouvé (Ecole Normale Supérieure Cachan/Université de Paris 13)
Geodesic Motions and Vector Fields on Anatomical Manifolds
11:00-11:15
Break
11:15-12:15
P. S. Krishnaprasad (University of Maryland)
Geometry of Collective Steering

Afternoon Session

12:15-14:00
Lunch (hosted by IPAM)
14:00-14:45
Anil Hirani (California Institute of Technology)
Discrete Exterior Calculus and the Averaged Template Matching Equations
14:45-15:30
Mathieu Desbrun (USC and Caltech)
Applied Geometry: Discrete Differential Calculus for Graphics
15:30-16:00
Break
16:00-17:00
James Gee (University of Pennsylvania)
DTI and Tensor Registration

Friday, July 16, 2004

Morning Session

01:00-01:00
td5|Day 5 - Statistical Inference and Shape
09:00-10:00
Olivier Faugeras (Institut National de Recherche en Informatique Automatique (INRIA))
Approximating shape metrics and application to shape warping and empirical shape statistics
10:00-11:00
John Csernansky (Washington University/School of Medicine)
Computational Anatomy and Neuropsychiatric Disease: Probabilistic Assessment of Variation and Statistical Inference of Group Difference, Hemispheric Asymmetry, and Time-Dependent Change
11:00-11:15
Break
11:15-12:15
Susumu Mori (Johns Hopkins University)
Constructing Atlases and Measuring Structural Brain Changes via Diffusion Tensor Imaging

Afternoon Session

12:15-14:00
Lunch (on your own)
14:00-14:45
Sarang Joshi (University of Utah)
Statistics of Shape: Simple Statistics on Interesting Spaces
14:45-15:30
Guido Gerig (University of Utah)
Shape analysis to assess neurodevelopment and neurodegeneration
15:30-16:00
Break
16:00-17:00
Nicholas Ayache (INRIA Sophia Antipolis)
Brain Image Registration for Shape Analysis: Contributions from the Epidaure Laboratory at INRIA

Saturday, July 17, 2004

Morning Session

09:00-09:15
Art Toga (University of California, Los Angeles (UCLA))
Multimodality Brain Atlases of Mice and Men
09:15-9:45
David Shattuck (University of California, Los Angeles (UCLA))
Cortical Surface Models from MRI
09:45-10:15
David Rex (UCLA)
Structured and Automated Analysis Pipelines for Brain Images
10:15-10:45
Break
10:45-11:15
J. Tilak Ratnanather (Johns Hopkins University)
Dynamic Programming Applications in Defining Cortical Manifold Boundaries
11:15-11:45
Lei Wang (Washington University in St. Louis)
Statistical Computation and Inference on the Subcortical Surface
11:45-12:15
Monica Hurdal (Florida State University)
Cortical Surface Correction and Conformal Flat Mapping: TopoCV and CirclePack

Afternoon Session

Tutorials and Demonstrations of Software for Computational Anatomy
2:00 PM - 4:00 PM at LONI
14:00-16:00
Tutorials and Demonstrations

Monday, July 19, 2004

Morning Session

00:00-00:00
week2|Week 2 - Functional Imaging
01:00-01:00
td6|Day 6 - Acquisition and preprocessing
08:45-9:00
Welcome and Opening Remarks
09:00-10:15
Douglas Noll (University of Michigan)
fMRI Acquisition
10:15-10:30
Break
10:30-11:45
Richard Buxton (University of California at San Diego)
Hemodynamic Models
11:45-13:30
Lunch (on your own)

Afternoon Session

13:30-14:45
Jean-Francois Mangin (Commissariat à l'Énergie Atomique (CEA))
Motion Correction
14:45-16:00
Steven Strother (University of Minnesota)
Effects of Preprocessing
16:00-16:15
Break
16:15-17:30
Alan Yuille (University of California, Los Angeles (UCLA))
Bayesian Inference and Visual Processing
17:30-19:30
Wine Reception (Hosted by IPAM)

Tuesday, July 20, 2004

Morning Session

01:00-01:00
td7|Day 7 - Univariate models: Classical and Bayesian Approaches
09:00-10:15
Thomas D. Wickens (University of California at Berkeley)
Statistical Modeling
10:15-10:30
Break
10:30-11:45
Steve Engel (UCLA)
The linear systems model of fMRI: Strengths and Weaknesses
11:45-13:30
Lunch (on your own)

Afternoon Session

13:30-14:45
Chris Genovese (Carnegie Mellon University)
Bayesian Analysis of Neuroimaging Data
14:45-16:00
Jan de Leeuw (University of California, Los Angeles (UCLA))
Hierarchical Modeling
16:00-16:15
Break
16:15-17:30
Tom Mitchell (Carnegie-Mellon University)
Machine Learning Approaches to fMRI

Wednesday, July 21, 2004

Morning Session

01:00-01:00
td8|Day 8 - Univariate models: Temporal autocorrelation & Multiple Testing
09:00-10:15
Steve Smith (University of Oxford)
fMRI Time Series - Signal and Noise Modelling
10:15-10:30
Break
10:30-11:45
Edward Bullmore (University of Cambridge)
Wavelets and functional MRI
11:45-13:30
Lunch (on your own)

Afternoon Session

13:30-14:45
Thomas Nichols (University of Oxford)
Group Modeling
14:45-16:00
Keith Worsley (University of Chicago)
Unified univariate and multivariate random field theory applied to canonical correlation SPMs from DBM
16:00-16:15
Break
16:15-17:30
Jonathan Taylor (Stanford University)
False Discovery Rate, Bayes and Multiple Comparisons

Thursday, July 22, 2004

Morning Session

01:00-01:00
td9|Day 9 - Multivariate techniques
09:00-10:15
Thomas Liu (University of California, San Diego (UCSD))
The Geometry of fMRI Statistics: Models, Efficiency, and Design
10:15-10:30
Break
10:30-11:45
Ivo Dinov (UCLA)
Wavelet-Based Statistical Analysis of fMRI Data
11:45-13:30
Lunch (hosted by IPAM)

Afternoon Session

13:30-14:45
Randy McIntosh (University of Toronto)
Connectivity Modeling
14:45-16:00
Will Penny (University College London)
Dynamic Causal Modeling
16:00-16:15
Break
16:15-17:30
Christian Beckmann (University of Oxford)
Independent Component Analysis for FMRI

Friday, July 23, 2004

Morning Session

01:00-01:00
td10|Day 10 - Multimodal imaging
09:00-10:15
Richard Leahy (University of Southern California)
Approaches to Inverse Problem Estimation
10:15-10:30
Break
10:30-11:45
Anders Dale (Massachusetts General Hospital)
Relating Brain Imaging Signals to Biophysical Models of Neuronal Circuits
11:45-13:30
Lunch (on your own)

Afternoon Session

13:30-14:45
David Boas (Massachusetts General Hospital)
Diffuse Optical Imaging of Brain Activation: Approaches to Optimizing Image Sensitivity, Resolution, and Accuracy
14:45-16:00
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Simultaneous EEG and fMRI acquisition
16:00-16:15
Conclusion
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