Graduate Summer School: Mathematics in Brain Imaging

July 12 - 23, 2004

Schedule

All times in this Schedule are Pacific Time (PT)

Week 1 - Computational Anatomy

Monday, July 12, 2004

Day 1 - Introduction to Computational Anatomy

Morning Session
9:00 - 9:15 Welcome and Opening Remarks
9:15 - 10:15
Michael Miller (Johns Hopkins University)

The Emerging Field of Computational Anatomy

10:15 - 10:45 Break
10:45 - 11:45
11:45 - 2:00 Lunch (on your own)

Afternoon Session
2:00 - 3:00
3:00 - 3:15 Break
3:15 - 4:15
Bruce Fischl (Massachusetts General Hospital)

Segmenting Anatomical Surfaces and Volumes with Markov Models
PDF Presentation
4:30 - 6:30 Wine Reception (Hosted by IPAM)

Tuesday, July 13, 2004

Day 2 - Constructing Anatomical Manifolds; Cortical Surface Maps

Morning Session
9:00 - 10:00
10:00 - 10:30 Break
10:30 - 11:30
Denis Riviere (CEA Saclay, France)

Sulcus Generation
Presentation Files (Zip Archive)
11:30 - 12:30
12:30 - 2:00 Lunch (on your own)

Afternoon Session
2:00 - 3:00
3:00 - 3:30 Break
3:30 - 4:30

Wednesday, July 14, 2004

Day 3 - Metrics on Anatomical Manifolds

Morning Session
9:00 - 10:00
David Mumford (Brown University)

Metric Spaces on the space of "Shape"
PDF Presentation
10:00 - 10:30 Break
10:30 - 11:30
Laurent Younes (Ecole Normale Supérieure, France)

Moving templates
Presentation Files (Zip Archive)
11:30 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
John Ashburner (Institute of Neurology)

Voxel-based morphometry

2:30 - 3:00 Break
3:00 - 4:00
Guillermo Sapiro (University of Minnesota)

Implicit Brain Imaging


Thursday, July 15, 2004

Day 4 - Physics of mappings

Morning Session
9:00 - 10:00
10:00 - 11:00
Alain Trouvé (Ecole Normale Supérieure, France)

Geodesic Motions and Vector Fields on Anatomical Manifolds
PDF Presentation
11:00 - 11:15 Break
11:15 - 12:15
P. S. Krishnaprasad (University of Maryland)

Geometry of Collective Steering

12:15 - 2:00 Lunch (Hosted by IPAM)

Afternoon Session
2:00 - 2:45
2:45 - 3:30
Mathieu Desbrun (University of Southern California)

Applied Geometry: Discrete Differential Calculus for Graphics

3:30 - 4:00 Break
4:00 - 5:00

Friday, July 16, 2004

Day 5 - Statistical Inference and Shape

Morning Session
9:00 - 10:00
10:00 - 11:00
11:00 - 11:15 Break
11:15 - 12:15
12:15 - 2:00 Lunch (on your own)

Afternoon Session
2:00 - 2:45
2:45 - 3:30
3:30 - 4:00 Break
4:00 - 5:00

Saturday, July 17, 2004

Morning Session
9:00 - 9:15
9:15 - 9:45
9:45 - 10:15
David Rex (UCLA)

Structured and Automated Analysis Pipelines for Brain Images

10:15 - 10:45 Break
10:45 - 11:15
11:15 - 11:45
Lei Wang (Washington University/School of Medicine)

Statistical Computation and Inference on the Subcortical Surface

11:45 - 12:15

Tutorials and Demonstrations of Software for Computational Anatomy
2:00 PM - 4:00 PM at LONI
2:00 - 4:00 Tutorials and Demonstrations

Week 2 - Functional Imaging

Monday, July 19, 2004

Day 6 - Acquisition and preprocessing

Morning Session
8:45 - 9:00 Welcome and Opening Remarks
9:00 - 10:15
Douglas Noll (University of Michigan)

fMRI Acquisition
Presentation Files (Zip Archive)
10:15 - 10:30 Break
10:30 - 11:45
Richard Buxton (University of California at San Diego)

Hemodynamic Models

11:45 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:45
Jean-Francois Mangin (CEA Saclay, France)

Motion Correction
Presentation (PowerPoint File)
2:45 - 4:00
Steven Strother (University of Minnesota)

Effects of Preprocessing
Presentation (PowerPoint File)
4:00 - 4:15 Break
4:15 - 5:30
Alan Yuille (UCLA)

Bayesian Inference and Visual Processing
Presentation (PowerPoint File)
5:30 - 7:30 Wine Reception (Hosted by IPAM)

Tuesday, July 20, 2004

Day 7 - Univariate models: Classical and Bayesian Approaches

Morning Session
9:00 - 10:15
Thomas D. Wickens (University of California at Berkeley)

Statistical Modeling
PDF Presentation
10:15 - 10:30 Break
10:30 - 11:45
11:45 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:45
Chris Genovese (Carnegie Mellon University)

Bayesian Analysis of Neuroimaging Data

2:45 - 4:00
Jan de Leeuw (UCLA)

Hierarchical Modeling

4:00 - 4:15 Break
4:15 - 5:30
Tom Mitchell (Carnegie Mellon University)

Machine Learning Approaches to fMRI
Presentation (PowerPoint File)

Wednesday, July 21, 2004

Day 8 - Univariate models: Temporal autocorrelation & Multiple Testing

Morning Session
9:00 - 10:15
10:15 - 10:30 Break
10:30 - 11:45
Edward Bullmore (Cambridge University)

Wavelets and functional MRI
Presentation (PowerPoint File)
11:45 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:45
Thomas Nichols (University of Michigan)

Group Modeling
Presentation (PowerPoint File)
2:45 - 4:00
4:00 - 4:15 Break
4:15 - 5:30
Jonathan Taylor (Stanford University)

False Discovery Rate, Bayes and Multiple Comparisons


Thursday, July 22, 2004

Day 9 - Multivariate techniques

Morning Session
9:00 - 10:15
Thomas Liu (University of California at San Diego)

The Geometry of fMRI Statistics: Models, Efficiency, and Design
PDF Presentation
10:15 - 10:30 Break
10:30 - 11:45
11:45 - 1:30 Lunch (Hosted by IPAM)

Afternoon Session
1:30 - 2:45
Randy McIntosh (University of Toronto)

Connectivity Modeling
Presentation (PowerPoint File)
2:45 - 4:00
Will Penny (UCLA)

Dynamic Causal Modeling
PDF Presentation
4:00 - 4:15 Break
4:15 - 5:30
Christian Beckmann (Oxford University)

Independent Component Analysis for FMRI
PDF Presentation

Friday, July 23, 2004

Day 10 - Multimodal imaging

Morning Session
9:00 - 10:15
Richard Leahy (University of Southern California)

Approaches to Inverse Problem Estimation
PDF Presentation
10:15 - 10:30 Break
10:30 - 11:45
11:45 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:45
2:45 - 4:00

To Be Announced
4:00 - 4:15 Conclusion