Image Analysis Challenges in Molecular Microscopy - IPAM

Image Analysis Challenges in Molecular Microscopy

January 28 - February 1, 2008

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, January 28, 2008

Morning Session

08:00-08:50
Check-In/Light Breakfast (Hosted by IPAM)
08:50-09:00
Welcome and Opening Remarks
09:00-09:45
Sriram Subramaniam (University of British Columbia)
Towards visualizing the architectures of cells and viruses at molecular resolution.
09:45-10:00
Break
10:00-10:45
Frank Natterer (Westfälische Wilhelms Universität Münster)
Imaging with the Helmholtz equation
10:45-11:00
Break
11:00-11:45
Chandrajit Bajaj (University of Texas at Austin)
MOLECULAR ELECTRON MICROSCOPY TO BIO-PHYSICAL MODELING AND ANALYSIS
11:45-13:45
Lunch (on your own)

Afternoon Session

13:45-14:30
Martin Rumpf (Rheinische Friedrich-Wilhelms-Universität Bonn)
Extracting grain boundaries and macroscopic deformations from images on atomic scale
14:30-14:45
Break
14:45-15:30
Hong Zhou (University of California, Los Angeles (UCLA))
Toward atomic resolution structural determination by cryoEM
15:30-15:45
Break
15:45-16:45
Tour of UCLA's Electron Imaging Center

Tuesday, January 29, 2008

Morning Session

08:00-09:00
Continental Breakfast
09:00-09:45
Alberto Bartesaghi (National Institute of Health NCI)
Challenges in high throughput electron tomography applications
09:45-10:00
Break
10:00-10:45
Steven Ludtke (Baylor College of Medicine)
Resolution and Dynamics in Single Particle Analysis
10:45-11:00
Break
11:00-11:45
Paul French (Imperial College)
Multidimensional fluorescence imaging
11:45-13:45
Lunch (on your own)

Afternoon Session

13:45-14:30
Jelena Kovacevic (Carnegie-Mellon University)
Problems in Biological Imaging: Opportunities for Signal Processing
14:30-14:45
Break
14:45-15:30
Gregory Beylkin (University of Colorado Boulder)
Algorithms and challenges of electron microscope tomography
15:30-15:45
Break
15:45-16:30
Gabor Herman (City University of New York (CUNY))
Combinatorial Classification of Heterogeneous Electron Microscopic Projection Images into Homogeneous Subsets (in collaboration with M. Kalinowski)
16:30-18:00
Reception (Location: IPAM Lobby)

Wednesday, January 30, 2008

Morning Session

08:30-09:30
Continental Breakfast
09:30-10:15
Jose Carazo (Centro Nacional de Biotecnología (CSIS))
EXPLORING THE CONFORMATIONAL FLEXIBILITY OF MACROMOLECULAR NANOMACHINES
10:15-10:30
Break
10:30-11:15
Joachim Frank (SUNY Albany)
Single-particle Reconstruction of the Ribosome -- The Struggle to Get Toward Atomic Resolution
11:15-11:30
Break
11:30-12:15
Ronald DeVore (Texas A&M University - College Station)
A Taste of Compressed Sensing

Afternoon Session

12:15-14:00
Lunch (on your own)
14:00-14:45
Robert Murphy (Carnegie-Mellon University)
AUTOMATED PROTEOME-WIDE DETERMINATION AND MODELING OF SUBCELLULAR LOCATION FOR SYSTEMS BIOLOGY
14:45-15:00
Break
15:00-15:45
Hanspeter Winkler (Florida State University)
COMPUTATIONAL METHODS IN ELECTRON TOMOGRAPHY AND VOLUME DATA ANALYSIS
15:45-16:00
Break

Thursday, January 31, 2008

Morning Session

08:00-09:00
Continental Breakfast
09:00-09:45
Pawel Penczek (University of Texas at Houston - Medical School)
Molecules in motion - towards 4D cryo-EM
09:45-10:00
Break
10:00-10:45
Guillermo Sapiro (University of Minnesota, Twin Cities)
Learning sparse image representations: Theory and applications in tomography
10:45-11:00
Break
11:00-11:45
Jerry Prince (Johns Hopkins University)
Micro and Macro Structure from Diffusion Weighted MRI
11:45-13:45
Lunch (on your own)

Afternoon Session

13:45-14:30
Adel Faridani (Oregon State University)
Numerical and theoretical explorations in helical and fan-beam tomography
14:30-14:45
Break
14:45-15:30
Yoel Shkolnisky (Yale University)
Cryo-EM Structure Determination through Eigenvectors of Sparse Matrices
15:30-15:45
Break
15:45-16:30
John Kaufhold (Science Applications International Corporation (SAIC))
Automated neuroanatomical microvessel segmentation, nuclei labeling, and geometric computations with 3D two photon laser scanning microscopy
Printable Version