Workshop IV: Search and Knowledge Building for Biological Datasets

Part of the Long Program Mathematics of Knowledge and Search Engines
November 26 - 30, 2007

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, November 26, 2007

Morning Session
8:00 - 8:50 Check-In/Light Breakfast (Hosted by IPAM)
8:50 - 9:00 Welcome and Opening Remarks
9:00 - 10:00
Olga Troyanskaya (Princeton University)

 

10:00 - 10:30 Break
10:30 - 11:30
11:30 - 1:00 Lunch (on your own)

Afternoon Session
1:00 - 2:00
Chris Wiggins (Columbia University)

Defining, Inferring, and Encoding modularity

2:00 - 2:30 Break
2:30 - 3:30
3:30 - 4:00 Coffee Break
4:00 - 5:00
5:00 - 6:30 Reception (Location: IPAM Lobby)

Tuesday, November 27, 2007

Morning Session
8:00 - 8:30 Continental Breakfast
8:30 - 9:30
9:30 - 10:30
10:30 - 11:00 Break
11:00 - 12:00
Christina Leslie (Memorial Sloan-Kettering Cancer Center)

Learning predictive models of gene regulation

12:00 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
Trey G. Ideker (University of California, San Diego (UCSD))

Protein Network Comparative Genomics

2:30 - 3:30
Jiawei Han (University of Illinois at Urbana-Champaign)

Mining, Indexing, and Searching Graphs in Biological Databases
Presentation (PowerPoint File)
3:30 - 4:00 Coffee Break
4:00 - 5:00

Wednesday, November 28, 2007

Morning Session
8:00 - 9:00 Continental Breakfast
9:00 - 10:00
10:00 - 10:30 Break
10:30 - 11:30
Yoav Freund (University of California, San Diego (UCSD))

From microscopy images to models of cellular processes

11:30 - 1:00 Lunch (on your own)

Afternoon Session
1:00 - 2:00
2:00 - 2:30 Break
2:30 - 3:30
3:30 - 4:00 Coffee Break
4:00 - 5:00

Thursday, November 29, 2007

Morning Session
8:00 - 8:30 Continental Breakfast
8:30 - 9:30
Alexander Krasnitz (Cold Spring Harbor Laboratory)

Epicenter Analysis in Cancer
Presentation (PowerPoint File)
9:30 - 10:30
10:30 - 11:00 Break
11:00 - 12:00
12:00 - 1:30 Lunch (on your own)

Afternoon Session
1:30 - 2:30
Petros Drineas (Rensselaer Polytechnic Institute)

Identifying Ancestry Informative Markers via Principal Components Analysis
Presentation (PowerPoint File)
2:30 - 3:30
3:30 - 4:00 Coffee Break
4:00 - 5:00
Weixiong Zhang (Washington University in St. Louis)

Integrative computational analysis of microRNA transcriptional regulation


Friday, November 30, 2007

Morning Session
8:00 - 9:00 Continental Breakfast
9:00 - 10:00
10:00 - 10:30 Break
10:30 - 11:30
John Doyle (California Institute of Technology)

 
Presentation (PowerPoint File)
11:30 - 1:00 Lunch (on your own)

Afternoon Session
1:00 - 2:00
2:00 - 2:30 Break
2:30 - 3:30
Jeffrey Morris (University of Texas M. D. Anderson Cancer Center)

Applications of Wavelet-Based Functional Mixed Models to Proteomics and Genomics Data
PDF Presentation
3:30 - 4:00 Coffee Break