Expression Arrays Technologies and Methods of Analysis - IPAM

Expression Arrays Technologies and Methods of Analysis

Part of the Long Program Functional Genomics
October 11 - 15, 2000

Schedule

All times in this Schedule are Pacific Time (PT)

Wednesday, October 11, 2000

Afternoon Session

Inspirational Stories From Biology
14:00-14:50
Bruce Conklin (University of California at San Francisco)
Defining the Genomic Responses to G Protein Signals by Engineering Receptors and G Proteins in Transgenic Mice
14:50-15:40
Leena Peltonen (UCLA)
Finding Disease Genes: Lessons from Population Isolates
15:40-16:00
Break
16:00-17:00
Barbara Wold (California Institute of Technology)
Defining Regulatory Networks - Pitfalls and Progress from the Array-world
17:00-19:00
Wine/Cheese Reception (Hosted by IPAM)

Thursday, October 12, 2000

Morning Session

Databases I
09:00-10:00
Christopher Lee (University of California, Los Angeles (UCLA))
Genome-Wide Analysis of Human Sequence Diversity
10:00-10:30
Alan Perelson (Los Alamos National Laboratory)
Immune System Modeling: Influenza Vaccination
10:30-10:50
Break
10:50-11:20
Eugene Spier (Celera Genomics)
Celera: Genomic Databases & Gene Expression Services
11:20-12:00
Alan Roter (Iconix Pharmaceuticals, Inc.)
Chem Express - Facilitating Drug Discovery with an Integrated Database

Afternoon Session

12:00-14:00
Lunch (on your own)
Analysis of Expression Data I
14:00-14:30
Richard Simon (National Cancer Institute)
Statistical Aspects of the Design and Analysis of DNA Microarray Experiments
14:30-15:00
Rob Tibshirani (Stanford University)
Some Methods for the Analysis of Microarray Data
15:00-15:30
Carsten Rosenow (Affymetrix)
Large Scale Expression Monitoring Using GeneChip & #61666; Probe Arrays: Applications in Microbiology
15:30-16:00
Break
16:00-16:30
Glenn Albrecht (Lynx Therapeutics, Inc.)
How to Score, Differentially, 50,000 to 250,000 SNP’s, Against Two Populations of 100 to 1,000 Genome Each, in One Experiment, without Genotyping
16:30-17:00
Avi Shoshan (Compugen.com)
DNA Chips Designed to Detect Alternative Splicing
17:00-17:30
Break
17:30-19:00
Italian Buffet (reservation only)
New Technologies/Expression Arrays
19:00-20:00
Stanley Nelson (University of California, Los Angeles (UCLA))
Microarray Analysis for the Classification of Human Brain Tumors
20:00-20:30
Stephen Laderman (Agilent Technologies)
Flexible Expression Analysis Methods in the Context of Biomedical Research
20:30-21:00
Richard Glynne (Phenomix)
The Genome, Microarrays, and Cancer

Friday, October 13, 2000

Morning Session

New Technologies/SNP'S
09:00-10:00
Paul Heaney (Calbatech)
Genomic Applications of Automated High Throughput Mass Spectrometry
10:00-10:30
Michael Heller (Nanogen)
Microelectronic Arrays for DNA Diagnostic, Pharmacogenomic and Drug Discovery Applications
10:30-11:00
Deane Little (Hyseq)
Sequencing & SNP Detection by HyChip Array
11:00-11:15
Break
11:15-11:45
Luis Allegri (Motorola)
Oligonucleotide Microarray Platform for Gene Expression and SNP Analysis
11:45-12:15
Rolf Swenson (Orchid Biosciences)
The SNPStream 100K: An Ultra-High Throughput Genotyping Platform

Afternoon Session

12:15-12:45
Krishnan Nandabalan (Genaissance Pharmaceuticals)
Patterns of Variation and Linkage Disequilibrium in Key Pharmaceutical Genes

Saturday, October 14, 2000

Morning Session

Image Analysis/Data Compression
09:00-10:00
Tony Chan (King Abdullah Univ. of Science and Technology (KAUST))
Using Partial Differential Equations for Image Restoration and Segmentation
10:00-10:30
Stuart Kim (Stanford University)
Gene Expression Profiles in C. Elegans
10:30-11:00
Break
11:00-11:30
Bin Yu (University of California, Berkeley (UC Berkeley))
Compressing Gene Expression Data
11:30-12:00
Matthew Coleman (Lawrence Livermore National Laboratory)
Image Analysis of Customized Expression cDNA Microarrays

Afternoon Session

12:00-14:00
Lunch (on your own)
Analysis of Expression Data II
14:00-15:00
Christian Burks (Exelixis, Inc.)
Target Discovery: Model Organism Genetics and Functional Synteny
15:00-15:30
M. Michael Shabot (Cedars-Sinai Medical Center)
A Large Scale Oracle-Based Severity and Outcomes Database for Intensive Care
15:30-15:50
Break
15:50-16:15
Jane Staunton (Massachusetts Institute of Technology,Whitehead Institute)
Expression Analysis Environment at the Whitehead: Tools for Molecular Classification
16:15-16:45
Heiko Mueller (Monsanto / Pharmacia)
Statistically Robust E2F Induced Gene Expression Patterns in Functional Gene Expression Data Mining (Target Gene Bias Analysis)
16:45-17:30
Break
17:30-19:00
Barbeque (by reservation only)
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