Workshop III: Structural Proteomics

Part of the Long Program Proteomics: Sequence, Structure, Function
May 10 - 14, 2004

Schedule

All times in this Schedule are Pacific Time (PT)

Monday, May 10, 2004

Morning Session
8:30 - 9:15 Check-In/Light Breakfast (Hosted by IPAM)
9:15 - 9:30 Welcome and Opening Remarks
9:30 - 10:30
Arthur Lesk (Cambridge University)

Structure and Evolution of the Globins: We thought we understood them
PDF Presentation
10:30 - 11:00 Break
11:00 - 12:00
Ken Dill (University of California at San Francisco)

Protein Folding: From physics to conformational searching.

12:00 - 2:00 Lunch (on your own)

Afternoon Session
2:00 - 3:00
3:00 - 3:30 Break
3:30 - 4:30
Ingo Ruczinski (Johns Hopkins University)

Protein structure prediction using ROSETTA
Presentation (PowerPoint File)
4:30 - 4:45 Break
4:45 - 5:45
Steven Brenner (University of California at Berkeley)

Ancient protein evolutionary relationships inferred from structure
PDF Presentation
5:45 Wine/Cheese Reception (Hosted by IPAM)

Tuesday, May 11, 2004

Morning Session
8:30 - 9:30 Check-In/Light Breakfast (Hosted by IPAM)
9:30 - 10:30
Jose N. Onuchic (University of California at San Diego)

Exploring the protein funnel energy landscape for folding and function.
Presentation (PowerPoint File)
10:30 - 11:00 Break
11:00 - 12:00
Angel Garcia (Los Alamos National Laboratory)

Simulation of the folding / unfolding thermodynamics of protein A

12:00 - 2:00 Lunch (on your own)

Afternoon Session
2:00 - 3:00
3:00 - 3:30 Break
3:30 - 4:30
Edward Marcotte (University of Texas)

Working towards accurate protein interaction maps and the human interactome

4:30 - 5:30
Adam Godzik (Burnham Institute)

FATCAT : Flexible structure alignment of proteins: lessons for comparative modeling and structural genomics"


Wednesday, May 12, 2004

Morning Session
8:30 - 9:30 Check-In/Light Breakfast (Hosted by IPAM)
9:30 - 10:30
Patrick Aloy (European Molecular Biology Laboratory)

Structure-based assembly of protein complexes and networks

10:30 - 11:00 Break
11:00 - 12:00
12:00 - 2:00 Lunch (on your own)

Afternoon Session
2:00 - 3:00
Jeffrey Skolnick (State University of New York, Buffalo)

Prediction of Protein Structure and Function on a Proteomic Scale
Presentation (PowerPoint File)
3:00 - 3:30 Break
3:30 - 4:30
Patricia Babbitt (University of California at San Francisco)

A Model Linking Structure and Function in Mechanistically Diverse Enzyme Superfamilies
PDF Presentation
4:30 - 4:45 Break
4:45 - 5:45
5:45 Dinner (Hosted by IPAM)

Thursday, May 13, 2004

Morning Session
8:30 - 9:30 Check-In/Light Breakfast (Hosted by IPAM)
9:30 - 10:30
10:30 - 11:00 Break
11:00 - 12:00
12:00 - 2:00 Lunch (on your own)

Afternoon Session
2:00 - 3:00
3:00 - 3:30 Break
3:30 - 4:30

Friday, May 14, 2004

Morning Session
8:30 - 9:30 Check-In/Light Breakfast (Hosted by IPAM)
9:30 - 10:30
Sarah Teichmann (MRC Laboratory)

Evolution of Multi-Domain Proteins

10:30 - 11:00 Break
11:00 - 12:00
Nick Grishin (University of Texas, Southwestern Medical Center)

"Remote homology inference: what are the limits?"

12:00 - 1:00
Mansoor Saqi (Barts and The London School of Medicine and Dentistry)

Structural diversity within protein superfamilies: implications for remote homolog detection

1:00 Conclusion