All times in this Schedule are Pacific Time (PT)
Tuesday, September 19, 2000
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Morning Session
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10:00 - 11:00
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Molecular biology databases: The blueprint of life
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11:00 - 11:15
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Break
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11:15 - 12:15
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Molecular biology databases
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12:15 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Sequence analysis of nucleic acids and proteins I: Similarity searches
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Wednesday, September 20, 2000
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Morning Session
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10:00 - 11:00
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Sequence Analysis of nucleic acids and proteins II: Prediction of structure and function
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11:00 - 11:15
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Break
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11:15 - 12:15
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Terry Speed (University of California at Berkeley)
Network analysis of molecular interactions
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12:15 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Some molecular biology
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Thursday, September 21, 2000
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Morning Session
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10:00 - 11:00
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Timothy Triche (USC / CHLA)
Gene Expression Profiling as Indices of Biologic and Clinical Behavior in Cancer: Comparison of Clustering Methods and Correlating Biological Indicators: Technology & Gene Target ID
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11:00 - 11:15
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Break
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11:15 - 12:15
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12:15 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Friday, September 22, 2000
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Morning Session
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9:00 - 10:00
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10:00 - 11:15
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Break
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11:15 - 12:15
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Image analysis of cDNA microarrays
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12:15 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Basic statistical analysis of cDNA microarray data I
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Saturday, September 23, 2000
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Morning Session
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10:00 - 11:30
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Gary Churchill (Jackson Laboratory)
Experimental Design and Data Analysis for Gene Expression Microarrays: Experimental Design
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11:30 - 1:00
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Gary Churchill (Jackson Laboratory)
Experimental Design and Data Analysis for Gene Expression Microarrays: ANOVA
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Monday, September 25, 2000
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Morning Session
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10:00 - 11:00
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Christopher Lee (UCLA)
Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Biology of sequence variation - polymorphism among individuals, ribotypes among cells
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11:00 - 11:15
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Break
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11:15 - 12:15
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Christopher Lee (UCLA)
Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Biology of sequence variation - polymorphism among individuals, ribotypes among cells
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12:15 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Basic statistical analysis of cDNA microarray data II
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Tuesday, September 26, 2000
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Morning Session
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10:00 - 11:00
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Christopher Lee (UCLA)
Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Role of probability in prediction and in computing confidence levels, graphs as a technique for calculating evidence
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11:00 - 11:15
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Break
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11:15 - 12:15
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Christopher Lee (UCLA)
Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Role of probability in prediction and in computing confidence levels, graphs as a technique for calculating evidence
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12:15 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Roger Brent (Molecular Sciences Institute)
Why Biologists Need Mathematicians I: Themes from Biological Systems
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Wednesday, September 27, 2000
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Morning Session
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10:00 - 11:00
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Roger Brent (Molecular Sciences Institute)
Why Biologists Need Mathematicians II: Types of data - how biological information is gathered.
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11:00 - 11:15
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Break
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11:15 - 12:15
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Roger Brent (Molecular Sciences Institute)
Why Biologists Need Mathematicians III: Possible Issues for Mathematicians
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12:15 - 1:30
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Lunch (on your own)
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Afternoon Session
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1:30 - 2:30
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Terry Speed (University of California at Berkeley)
Overview of Computational Biology for Mathematical Scientists: Classification and discrimination of cell lines using cDNA microarray data
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