Functional Genomics Tutorials - IPAM

Functional Genomics Tutorials

Part of the Long Program Functional Genomics
September 19 - 27, 2000

Schedule

All times in this Schedule are Pacific Time (PT)

Tuesday, September 19, 2000

Morning Session

10:00-11:00
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Molecular biology databases: The blueprint of life
11:00-11:15
Break
11:15-12:15
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Molecular biology databases

Afternoon Session

12:15-13:30
Lunch (on your own)
13:30-14:30
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Sequence analysis of nucleic acids and proteins I: Similarity searches

Wednesday, September 20, 2000

Morning Session

10:00-11:00
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Sequence Analysis of nucleic acids and proteins II: Prediction of structure and function
11:00-11:15
Break
11:15-12:15
Terry Speed (University of California, Berkeley (UC Berkeley))
Network analysis of molecular interactions

Afternoon Session

12:15-13:30
Lunch (on your own)
13:30-14:30
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Some molecular biology

Thursday, September 21, 2000

Morning Session

10:00-11:00
Timothy Triche (USC / CHLA)
Gene Expression Profiling as Indices of Biologic and Clinical Behavior in Cancer: Comparison of Clustering Methods and Correlating Biological Indicators: Technology & Gene Target ID
11:00-11:15
Break
11:15-12:15
Timothy Triche (USC / CHLA)
Gene Expression Profiling as Indices of Biologic and Clinical Behavior in Cancer: Comparison of Clustering Methods and Correlating Biological Indicators: Diagnostic Applications in Cancer

Afternoon Session

12:15-13:30
Lunch (on your own)
13:30-14:30
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: cDNA microarrays on glass slides

Friday, September 22, 2000

Morning Session

09:00-10:00
Timothy Triche (USC / CHLA)
Gene Expression Profiling as Indices of Biologic and Clinical Behavior in Cancer: Comparison of Clustering Methods and Correlating Biological Indicators: Childhood Sarcoma Classification by Gene Expression Profiles
10:00-11:15
Break
11:15-12:15
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Image analysis of cDNA microarrays

Afternoon Session

12:15-13:30
Lunch (on your own)
13:30-14:30
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Basic statistical analysis of cDNA microarray data I

Monday, September 25, 2000

Morning Session

10:00-11:00
Christopher Lee (University of California, Los Angeles (UCLA))
Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Biology of sequence variation - polymorphism among individuals, ribotypes among cells
11:00-11:15
Break
11:15-12:15
Christopher Lee (University of California, Los Angeles (UCLA))
Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Biology of sequence variation - polymorphism among individuals, ribotypes among cells

Afternoon Session

12:15-13:30
Lunch (on your own)
13:30-14:30
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Basic statistical analysis of cDNA microarray data II

Tuesday, September 26, 2000

Morning Session

10:00-11:00
Christopher Lee (University of California, Los Angeles (UCLA))
Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Role of probability in prediction and in computing confidence levels, graphs as a technique for calculating evidence
11:00-11:15
Break
11:15-12:15
Christopher Lee (University of California, Los Angeles (UCLA))
Whole Genome Analysis of Sequence Variation--Graph Models of Evidence: Role of probability in prediction and in computing confidence levels, graphs as a technique for calculating evidence

Afternoon Session

12:15-13:30
Lunch (on your own)
13:30-14:30
Roger Brent (Molecular Sciences Institute)
Why Biologists Need Mathematicians I: Themes from Biological Systems

Wednesday, September 27, 2000

Morning Session

10:00-11:00
Roger Brent (Molecular Sciences Institute)
Why Biologists Need Mathematicians II: Types of data - how biological information is gathered.
11:00-11:15
Break
11:15-12:15
Roger Brent (Molecular Sciences Institute)
Why Biologists Need Mathematicians III: Possible Issues for Mathematicians

Afternoon Session

12:15-13:30
Lunch (on your own)
13:30-14:30
Terry Speed (University of California, Berkeley (UC Berkeley))
Overview of Computational Biology for Mathematical Scientists: Classification and discrimination of cell lines using cDNA microarray data
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